Experiment: Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_10040 and AO356_10045 overlap by 4 nucleotides AO356_10045 and AO356_10050 overlap by 4 nucleotides AO356_10050 and AO356_10055 overlap by 4 nucleotides AO356_10055 and AO356_10060 are separated by 68 nucleotides
AO356_10040: AO356_10040 - dTDP-glucose 4,6-dehydratase, at 2,266,430 to 2,267,512
_10040
AO356_10045: AO356_10045 - glucose-1-phosphate thymidylyltransferase, at 2,267,509 to 2,268,384
_10045
AO356_10050: AO356_10050 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 2,268,381 to 2,268,926
_10050
AO356_10055: AO356_10055 - dTDP-4-dehydrorhamnose reductase, at 2,268,923 to 2,269,807
_10055
AO356_10060: AO356_10060 - ATPase, at 2,269,876 to 2,271,684
_10060
Position (kb)
2268
2269 Strain fitness (log2 ratio)
-1
0
1 at 2267.462 kb on + strand at 2267.462 kb on + strand at 2267.463 kb on - strand at 2267.463 kb on - strand at 2267.463 kb on - strand at 2269.813 kb on + strand at 2269.813 kb on + strand at 2269.819 kb on + strand at 2269.820 kb on - strand at 2269.820 kb on - strand at 2269.820 kb on - strand at 2269.837 kb on + strand at 2269.837 kb on + strand at 2269.837 kb on + strand at 2269.837 kb on + strand at 2269.837 kb on + strand at 2269.837 kb on + strand at 2269.838 kb on - strand at 2269.838 kb on - strand at 2269.838 kb on - strand at 2269.838 kb on - strand at 2269.838 kb on - strand at 2269.843 kb on + strand at 2269.843 kb on + strand at 2269.843 kb on + strand at 2269.843 kb on + strand at 2269.844 kb on - strand at 2269.846 kb on + strand at 2269.846 kb on + strand at 2269.846 kb on + strand at 2269.846 kb on + strand at 2269.846 kb on + strand at 2269.846 kb on + strand at 2269.847 kb on - strand at 2269.847 kb on - strand at 2269.847 kb on - strand at 2269.847 kb on - strand at 2269.847 kb on - strand at 2269.847 kb on - strand at 2269.847 kb on - strand at 2269.847 kb on - strand at 2269.847 kb on - strand at 2269.847 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml remove 2,267,462 + +1.1 2,267,462 + +0.2 2,267,463 - +0.4 2,267,463 - +1.4 2,267,463 - -1.4 2,269,813 + +0.4 2,269,813 + +0.0 2,269,819 + -0.3 2,269,820 - -0.0 2,269,820 - +0.9 2,269,820 - -1.0 2,269,837 + +0.5 2,269,837 + -0.2 2,269,837 + -0.4 2,269,837 + -0.8 2,269,837 + +0.4 2,269,837 + +0.6 2,269,838 - +0.3 2,269,838 - -0.4 2,269,838 - +0.2 2,269,838 - +0.7 2,269,838 - +0.4 2,269,843 + +1.2 2,269,843 + -0.7 2,269,843 + +0.1 2,269,843 + -0.1 2,269,844 - -1.1 2,269,846 + -0.6 2,269,846 + -0.2 2,269,846 + +0.7 2,269,846 + +0.8 2,269,846 + +0.4 2,269,846 + -0.2 2,269,847 - +0.1 2,269,847 - +0.2 2,269,847 - +0.2 2,269,847 - -0.1 2,269,847 - +0.4 2,269,847 - -1.1 2,269,847 - -0.5 2,269,847 - +0.4 2,269,847 - +0.2 2,269,847 - -0.2
Or see this region's nucleotide sequence