Experiment: Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_09735 and AO356_09740 overlap by 4 nucleotides AO356_09740 and AO356_09745 are separated by 577 nucleotides AO356_09745 and AO356_09750 are separated by 76 nucleotides AO356_09750 and AO356_09755 are separated by 203 nucleotides
AO356_09735: AO356_09735 - transposase, at 2,209,944 to 2,210,780
_09735
AO356_09740: AO356_09740 - transposase, at 2,210,777 to 2,211,079
_09740
AO356_09745: AO356_09745 - hypothetical protein, at 2,211,657 to 2,212,019
_09745
AO356_09750: AO356_09750 - rRNA methylase, at 2,212,096 to 2,212,551
_09750
AO356_09755: AO356_09755 - preprotein translocase subunit SecB, at 2,212,755 to 2,213,237
_09755
Position (kb)
2211
2212
2213 Strain fitness (log2 ratio)
-2
-1
0
1 at 2211.140 kb on + strand at 2211.140 kb on + strand at 2211.266 kb on + strand at 2211.267 kb on - strand at 2211.399 kb on + strand at 2211.451 kb on + strand at 2211.452 kb on - strand at 2211.452 kb on - strand at 2211.452 kb on - strand at 2211.456 kb on - strand at 2211.456 kb on - strand at 2211.485 kb on + strand at 2211.485 kb on + strand at 2211.486 kb on - strand at 2211.512 kb on + strand at 2211.512 kb on + strand at 2211.512 kb on + strand at 2211.513 kb on - strand at 2211.552 kb on + strand at 2211.553 kb on - strand at 2211.579 kb on + strand at 2211.579 kb on + strand at 2211.579 kb on + strand at 2211.600 kb on - strand at 2211.658 kb on + strand at 2211.658 kb on + strand at 2211.658 kb on + strand at 2211.658 kb on + strand at 2211.658 kb on + strand at 2211.658 kb on + strand at 2211.659 kb on - strand at 2211.659 kb on - strand at 2211.659 kb on - strand at 2211.659 kb on - strand at 2211.659 kb on - strand at 2211.659 kb on - strand at 2211.659 kb on - strand at 2212.032 kb on + strand at 2212.032 kb on + strand at 2212.032 kb on + strand at 2212.033 kb on - strand at 2212.033 kb on - strand at 2212.033 kb on - strand at 2212.033 kb on - strand at 2212.033 kb on - strand at 2212.033 kb on - strand at 2212.033 kb on - strand at 2212.061 kb on + strand at 2212.061 kb on + strand at 2212.061 kb on + strand at 2212.061 kb on + strand at 2212.062 kb on - strand at 2212.062 kb on - strand at 2212.079 kb on + strand at 2212.080 kb on - strand at 2212.080 kb on - strand at 2212.080 kb on - strand at 2212.080 kb on - strand at 2212.080 kb on - strand at 2212.247 kb on - strand, within AO356_09750 at 2212.255 kb on + strand, within AO356_09750 at 2212.255 kb on + strand, within AO356_09750 at 2212.255 kb on + strand, within AO356_09750 at 2212.255 kb on + strand, within AO356_09750 at 2212.255 kb on + strand, within AO356_09750 at 2212.256 kb on - strand, within AO356_09750 at 2212.256 kb on - strand, within AO356_09750 at 2212.256 kb on - strand, within AO356_09750 at 2212.329 kb on + strand, within AO356_09750 at 2212.329 kb on + strand, within AO356_09750 at 2212.330 kb on - strand, within AO356_09750 at 2212.425 kb on - strand, within AO356_09750 at 2212.501 kb on - strand, within AO356_09750 at 2212.501 kb on - strand, within AO356_09750 at 2212.519 kb on + strand at 2212.520 kb on - strand at 2212.520 kb on - strand at 2212.737 kb on - strand at 2212.737 kb on - strand at 2212.749 kb on - strand at 2212.749 kb on - strand at 2212.749 kb on - strand at 2212.757 kb on - strand at 2212.807 kb on + strand, within AO356_09755 at 2212.808 kb on - strand, within AO356_09755
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml remove 2,211,140 + +0.0 2,211,140 + +0.4 2,211,266 + -0.2 2,211,267 - +0.4 2,211,399 + +0.3 2,211,451 + +0.6 2,211,452 - -0.3 2,211,452 - -0.3 2,211,452 - -0.7 2,211,456 - -1.0 2,211,456 - -0.9 2,211,485 + +1.1 2,211,485 + +0.1 2,211,486 - -1.5 2,211,512 + +1.2 2,211,512 + +0.1 2,211,512 + +1.4 2,211,513 - -0.5 2,211,552 + +0.1 2,211,553 - +0.9 2,211,579 + -0.5 2,211,579 + +0.3 2,211,579 + +0.2 2,211,600 - +0.6 2,211,658 + +0.6 2,211,658 + -0.8 2,211,658 + +1.2 2,211,658 + +0.5 2,211,658 + +0.1 2,211,658 + +0.4 2,211,659 - +0.2 2,211,659 - -0.4 2,211,659 - +0.6 2,211,659 - +0.2 2,211,659 - -0.5 2,211,659 - -0.5 2,211,659 - -0.2 2,212,032 + +0.8 2,212,032 + +0.8 2,212,032 + +0.7 2,212,033 - +0.1 2,212,033 - +0.8 2,212,033 - +0.6 2,212,033 - +0.7 2,212,033 - +0.6 2,212,033 - +0.4 2,212,033 - -2.1 2,212,061 + +0.5 2,212,061 + +0.6 2,212,061 + -0.0 2,212,061 + -0.2 2,212,062 - +0.0 2,212,062 - -1.0 2,212,079 + +1.6 2,212,080 - +0.6 2,212,080 - -0.1 2,212,080 - +0.4 2,212,080 - +0.2 2,212,080 - +0.5 2,212,247 - AO356_09750 0.33 -0.3 2,212,255 + AO356_09750 0.35 -0.0 2,212,255 + AO356_09750 0.35 -0.4 2,212,255 + AO356_09750 0.35 +0.2 2,212,255 + AO356_09750 0.35 +1.7 2,212,255 + AO356_09750 0.35 +0.6 2,212,256 - AO356_09750 0.35 +1.1 2,212,256 - AO356_09750 0.35 +0.5 2,212,256 - AO356_09750 0.35 +0.3 2,212,329 + AO356_09750 0.51 -0.3 2,212,329 + AO356_09750 0.51 -0.1 2,212,330 - AO356_09750 0.51 +1.2 2,212,425 - AO356_09750 0.72 +0.9 2,212,501 - AO356_09750 0.89 -0.4 2,212,501 - AO356_09750 0.89 -0.3 2,212,519 + +0.1 2,212,520 - -0.4 2,212,520 - +0.3 2,212,737 - +0.9 2,212,737 - +0.5 2,212,749 - +0.6 2,212,749 - +0.7 2,212,749 - +0.7 2,212,757 - +0.2 2,212,807 + AO356_09755 0.11 +0.2 2,212,808 - AO356_09755 0.11 +0.5
Or see this region's nucleotide sequence