Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_09725

Experiment: Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_09715 and AO356_09720 overlap by 4 nucleotidesAO356_09720 and AO356_09725 are separated by 253 nucleotidesAO356_09725 and AO356_09730 overlap by 4 nucleotides AO356_09715: AO356_09715 - hypothetical protein, at 2,205,948 to 2,206,466 _09715 AO356_09720: AO356_09720 - penicillin-binding protein, at 2,206,463 to 2,207,086 _09720 AO356_09725: AO356_09725 - histidine kinase, at 2,207,340 to 2,208,425 _09725 AO356_09730: AO356_09730 - nitrogen regulation protein NR(I), at 2,208,422 to 2,209,858 _09730 Position (kb) 2207 2208 2209Strain fitness (log2 ratio) -2 -1 0 1 2at 2206.526 kb on + strand, within AO356_09720at 2206.526 kb on + strand, within AO356_09720at 2206.526 kb on + strand, within AO356_09720at 2206.526 kb on + strand, within AO356_09720at 2206.527 kb on - strand, within AO356_09720at 2206.527 kb on - strand, within AO356_09720at 2206.527 kb on - strand, within AO356_09720at 2206.527 kb on - strand, within AO356_09720at 2206.527 kb on - strand, within AO356_09720at 2206.527 kb on - strand, within AO356_09720at 2206.527 kb on - strand, within AO356_09720at 2206.528 kb on + strand, within AO356_09720at 2206.528 kb on + strand, within AO356_09720at 2206.528 kb on + strand, within AO356_09720at 2206.528 kb on + strand, within AO356_09720at 2206.528 kb on + strand, within AO356_09720at 2206.528 kb on + strand, within AO356_09720at 2206.528 kb on + strand, within AO356_09720at 2206.528 kb on + strand, within AO356_09720at 2206.528 kb on + strand, within AO356_09720at 2206.529 kb on - strand, within AO356_09720at 2206.529 kb on - strand, within AO356_09720at 2206.529 kb on - strand, within AO356_09720at 2206.529 kb on - strand, within AO356_09720at 2206.529 kb on - strand, within AO356_09720at 2206.529 kb on - strand, within AO356_09720at 2206.529 kb on - strand, within AO356_09720at 2206.529 kb on - strand, within AO356_09720at 2206.529 kb on - strand, within AO356_09720at 2206.529 kb on - strand, within AO356_09720at 2206.532 kb on + strand, within AO356_09720at 2206.532 kb on + strand, within AO356_09720at 2206.532 kb on + strand, within AO356_09720at 2206.532 kb on + strand, within AO356_09720at 2206.532 kb on + strand, within AO356_09720at 2206.532 kb on + strand, within AO356_09720at 2206.533 kb on - strand, within AO356_09720at 2206.533 kb on - strand, within AO356_09720at 2206.533 kb on - strand, within AO356_09720at 2206.533 kb on - strand, within AO356_09720at 2206.533 kb on - strand, within AO356_09720at 2206.533 kb on - strand, within AO356_09720at 2206.533 kb on - strand, within AO356_09720at 2206.533 kb on - strand, within AO356_09720at 2206.533 kb on - strand, within AO356_09720at 2206.557 kb on + strand, within AO356_09720at 2206.557 kb on + strand, within AO356_09720at 2206.557 kb on + strand, within AO356_09720at 2206.558 kb on - strand, within AO356_09720at 2206.558 kb on - strand, within AO356_09720at 2206.558 kb on - strand, within AO356_09720at 2206.688 kb on + strand, within AO356_09720at 2206.732 kb on - strand, within AO356_09720at 2206.965 kb on + strand, within AO356_09720at 2206.966 kb on - strand, within AO356_09720at 2207.012 kb on + strand, within AO356_09720at 2207.107 kb on + strandat 2207.107 kb on + strandat 2207.108 kb on - strandat 2207.109 kb on + strandat 2207.109 kb on + strandat 2207.109 kb on + strandat 2207.110 kb on - strandat 2207.120 kb on + strandat 2207.120 kb on + strandat 2207.120 kb on + strandat 2207.121 kb on - strandat 2207.121 kb on - strandat 2207.132 kb on + strandat 2207.133 kb on - strandat 2207.133 kb on - strandat 2207.133 kb on - strandat 2207.133 kb on - strandat 2207.165 kb on + strandat 2207.224 kb on + strandat 2207.224 kb on + strandat 2207.225 kb on - strandat 2207.283 kb on - strandat 2207.283 kb on - strandat 2207.283 kb on - strandat 2207.283 kb on - strandat 2207.320 kb on - strandat 2207.320 kb on - strandat 2207.320 kb on - strandat 2207.359 kb on + strandat 2207.359 kb on + strandat 2207.359 kb on + strandat 2207.359 kb on + strandat 2207.359 kb on + strandat 2207.359 kb on + strandat 2207.359 kb on + strandat 2207.360 kb on - strandat 2207.427 kb on + strandat 2207.427 kb on + strandat 2207.427 kb on + strandat 2207.427 kb on + strandat 2207.428 kb on - strandat 2207.428 kb on - strandat 2207.428 kb on - strandat 2207.619 kb on + strand, within AO356_09725at 2207.620 kb on - strand, within AO356_09725at 2207.791 kb on + strand, within AO356_09725at 2207.792 kb on - strand, within AO356_09725at 2207.792 kb on - strand, within AO356_09725at 2207.847 kb on + strand, within AO356_09725at 2207.847 kb on + strand, within AO356_09725at 2207.847 kb on + strand, within AO356_09725at 2207.847 kb on + strand, within AO356_09725at 2207.848 kb on - strand, within AO356_09725at 2207.848 kb on - strand, within AO356_09725at 2207.848 kb on - strand, within AO356_09725at 2208.019 kb on - strand, within AO356_09725at 2208.466 kb on + strandat 2208.466 kb on + strandat 2208.466 kb on + strandat 2208.466 kb on + strandat 2208.704 kb on + strand, within AO356_09730at 2208.705 kb on - strand, within AO356_09730at 2208.725 kb on + strand, within AO356_09730at 2209.225 kb on + strand, within AO356_09730at 2209.225 kb on + strand, within AO356_09730at 2209.226 kb on - strand, within AO356_09730at 2209.226 kb on - strand, within AO356_09730at 2209.226 kb on - strand, within AO356_09730at 2209.345 kb on + strand, within AO356_09730at 2209.345 kb on + strand, within AO356_09730

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml
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2,206,526 + AO356_09720 0.10 -1.3
2,206,526 + AO356_09720 0.10 +0.2
2,206,526 + AO356_09720 0.10 -0.0
2,206,526 + AO356_09720 0.10 +0.1
2,206,527 - AO356_09720 0.10 +0.1
2,206,527 - AO356_09720 0.10 +0.5
2,206,527 - AO356_09720 0.10 +0.6
2,206,527 - AO356_09720 0.10 -1.7
2,206,527 - AO356_09720 0.10 +0.3
2,206,527 - AO356_09720 0.10 -0.4
2,206,527 - AO356_09720 0.10 +0.5
2,206,528 + AO356_09720 0.10 -0.9
2,206,528 + AO356_09720 0.10 +0.2
2,206,528 + AO356_09720 0.10 -0.1
2,206,528 + AO356_09720 0.10 +0.5
2,206,528 + AO356_09720 0.10 +1.2
2,206,528 + AO356_09720 0.10 +0.6
2,206,528 + AO356_09720 0.10 +0.5
2,206,528 + AO356_09720 0.10 -0.9
2,206,528 + AO356_09720 0.10 +0.1
2,206,529 - AO356_09720 0.11 -0.4
2,206,529 - AO356_09720 0.11 +1.9
2,206,529 - AO356_09720 0.11 +0.2
2,206,529 - AO356_09720 0.11 +0.6
2,206,529 - AO356_09720 0.11 -0.0
2,206,529 - AO356_09720 0.11 +0.0
2,206,529 - AO356_09720 0.11 -2.0
2,206,529 - AO356_09720 0.11 -0.3
2,206,529 - AO356_09720 0.11 -0.6
2,206,529 - AO356_09720 0.11 +0.7
2,206,532 + AO356_09720 0.11 +0.6
2,206,532 + AO356_09720 0.11 -0.6
2,206,532 + AO356_09720 0.11 +0.9
2,206,532 + AO356_09720 0.11 +0.6
2,206,532 + AO356_09720 0.11 +0.9
2,206,532 + AO356_09720 0.11 +0.5
2,206,533 - AO356_09720 0.11 -0.2
2,206,533 - AO356_09720 0.11 +0.3
2,206,533 - AO356_09720 0.11 -0.0
2,206,533 - AO356_09720 0.11 +0.6
2,206,533 - AO356_09720 0.11 +0.2
2,206,533 - AO356_09720 0.11 +1.2
2,206,533 - AO356_09720 0.11 +1.2
2,206,533 - AO356_09720 0.11 +0.0
2,206,533 - AO356_09720 0.11 -0.3
2,206,557 + AO356_09720 0.15 -0.3
2,206,557 + AO356_09720 0.15 -0.7
2,206,557 + AO356_09720 0.15 +0.6
2,206,558 - AO356_09720 0.15 +0.0
2,206,558 - AO356_09720 0.15 +1.0
2,206,558 - AO356_09720 0.15 -0.1
2,206,688 + AO356_09720 0.36 +2.0
2,206,732 - AO356_09720 0.43 +0.2
2,206,965 + AO356_09720 0.80 +0.3
2,206,966 - AO356_09720 0.81 +0.4
2,207,012 + AO356_09720 0.88 +0.6
2,207,107 + +0.7
2,207,107 + -0.7
2,207,108 - -2.0
2,207,109 + +1.1
2,207,109 + +1.3
2,207,109 + +0.4
2,207,110 - -0.7
2,207,120 + +0.7
2,207,120 + +0.9
2,207,120 + +0.9
2,207,121 - +0.1
2,207,121 - +0.6
2,207,132 + +1.0
2,207,133 - -1.0
2,207,133 - -0.6
2,207,133 - +0.3
2,207,133 - -0.3
2,207,165 + +2.5
2,207,224 + +2.2
2,207,224 + +2.1
2,207,225 - +0.6
2,207,283 - -0.4
2,207,283 - +1.0
2,207,283 - +0.6
2,207,283 - +0.2
2,207,320 - -0.3
2,207,320 - +0.3
2,207,320 - +0.6
2,207,359 + +1.5
2,207,359 + +0.5
2,207,359 + +0.3
2,207,359 + +0.6
2,207,359 + -0.3
2,207,359 + -0.4
2,207,359 + +0.1
2,207,360 - +0.6
2,207,427 + +0.3
2,207,427 + +0.2
2,207,427 + +0.1
2,207,427 + -0.8
2,207,428 - -0.0
2,207,428 - -0.1
2,207,428 - -0.9
2,207,619 + AO356_09725 0.26 +1.3
2,207,620 - AO356_09725 0.26 -0.0
2,207,791 + AO356_09725 0.42 +0.3
2,207,792 - AO356_09725 0.42 -1.1
2,207,792 - AO356_09725 0.42 +0.5
2,207,847 + AO356_09725 0.47 -0.4
2,207,847 + AO356_09725 0.47 -0.1
2,207,847 + AO356_09725 0.47 +1.3
2,207,847 + AO356_09725 0.47 +0.8
2,207,848 - AO356_09725 0.47 +0.4
2,207,848 - AO356_09725 0.47 -1.4
2,207,848 - AO356_09725 0.47 +0.4
2,208,019 - AO356_09725 0.63 +0.5
2,208,466 + -0.0
2,208,466 + -1.5
2,208,466 + +1.1
2,208,466 + +0.8
2,208,704 + AO356_09730 0.20 -0.2
2,208,705 - AO356_09730 0.20 -0.4
2,208,725 + AO356_09730 0.21 +0.3
2,209,225 + AO356_09730 0.56 +1.3
2,209,225 + AO356_09730 0.56 +2.2
2,209,226 - AO356_09730 0.56 +0.9
2,209,226 - AO356_09730 0.56 +0.8
2,209,226 - AO356_09730 0.56 +0.4
2,209,345 + AO356_09730 0.64 +0.2
2,209,345 + AO356_09730 0.64 +0.0

Or see this region's nucleotide sequence