Experiment: Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04580 and AO356_04585 overlap by 32 nucleotides AO356_04585 and AO356_04590 overlap by 17 nucleotides AO356_04590 and AO356_04595 are separated by 149 nucleotides
AO356_04580: AO356_04580 - L-aspartate oxidase, at 1,032,222 to 1,033,838
_04580
AO356_04585: AO356_04585 - hypothetical protein, at 1,033,807 to 1,034,259
_04585
AO356_04590: AO356_04590 - hypothetical protein, at 1,034,243 to 1,034,497
_04590
AO356_04595: AO356_04595 - aminomethyltransferase, at 1,034,647 to 1,035,588
_04595
Position (kb)
1034
1035 Strain fitness (log2 ratio)
-1
0
1
2 at 1033.275 kb on + strand, within AO356_04580 at 1033.275 kb on + strand, within AO356_04580 at 1033.275 kb on + strand, within AO356_04580 at 1033.276 kb on - strand, within AO356_04580 at 1033.276 kb on - strand, within AO356_04580 at 1033.277 kb on + strand, within AO356_04580 at 1033.277 kb on + strand, within AO356_04580 at 1033.277 kb on + strand, within AO356_04580 at 1033.277 kb on + strand, within AO356_04580 at 1033.277 kb on + strand, within AO356_04580 at 1033.277 kb on + strand, within AO356_04580 at 1033.277 kb on + strand, within AO356_04580 at 1033.277 kb on + strand, within AO356_04580 at 1033.278 kb on - strand, within AO356_04580 at 1033.278 kb on - strand, within AO356_04580 at 1033.278 kb on - strand, within AO356_04580 at 1033.278 kb on - strand, within AO356_04580 at 1033.332 kb on + strand, within AO356_04580 at 1033.332 kb on + strand, within AO356_04580 at 1033.332 kb on + strand, within AO356_04580 at 1033.333 kb on - strand, within AO356_04580 at 1033.333 kb on - strand, within AO356_04580 at 1033.333 kb on - strand, within AO356_04580 at 1033.333 kb on - strand, within AO356_04580 at 1033.333 kb on - strand, within AO356_04580 at 1033.569 kb on + strand, within AO356_04580 at 1033.569 kb on + strand, within AO356_04580 at 1033.569 kb on + strand, within AO356_04580 at 1033.570 kb on - strand, within AO356_04580 at 1033.570 kb on - strand, within AO356_04580 at 1033.653 kb on + strand, within AO356_04580 at 1033.654 kb on - strand, within AO356_04580 at 1033.662 kb on + strand, within AO356_04580 at 1033.662 kb on + strand, within AO356_04580 at 1033.662 kb on + strand, within AO356_04580 at 1033.662 kb on + strand, within AO356_04580 at 1033.663 kb on - strand, within AO356_04580 at 1033.663 kb on - strand, within AO356_04580 at 1033.663 kb on - strand, within AO356_04580 at 1033.663 kb on - strand, within AO356_04580 at 1033.764 kb on + strand at 1033.764 kb on + strand at 1033.764 kb on + strand at 1033.764 kb on + strand at 1033.764 kb on + strand at 1033.765 kb on - strand at 1033.765 kb on - strand at 1033.765 kb on - strand at 1033.808 kb on + strand at 1033.808 kb on + strand at 1033.809 kb on - strand at 1033.809 kb on - strand at 1033.809 kb on - strand at 1033.827 kb on + strand at 1033.827 kb on + strand at 1033.827 kb on + strand at 1033.828 kb on - strand at 1033.828 kb on - strand at 1033.968 kb on + strand, within AO356_04585 at 1034.244 kb on + strand at 1034.244 kb on + strand at 1034.244 kb on + strand at 1034.244 kb on + strand at 1034.245 kb on - strand at 1034.245 kb on - strand at 1034.245 kb on - strand at 1034.245 kb on - strand at 1034.245 kb on - strand at 1034.514 kb on - strand at 1034.514 kb on - strand at 1034.525 kb on - strand at 1034.525 kb on - strand at 1034.526 kb on + strand at 1034.526 kb on + strand at 1034.526 kb on + strand at 1034.527 kb on - strand at 1034.527 kb on - strand at 1034.527 kb on - strand at 1034.527 kb on - strand at 1034.587 kb on + strand at 1034.610 kb on + strand at 1034.611 kb on - strand at 1034.611 kb on - strand at 1034.611 kb on - strand at 1034.619 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml remove 1,033,275 + AO356_04580 0.65 -0.4 1,033,275 + AO356_04580 0.65 +0.6 1,033,275 + AO356_04580 0.65 +0.3 1,033,276 - AO356_04580 0.65 -0.0 1,033,276 - AO356_04580 0.65 -0.9 1,033,277 + AO356_04580 0.65 +1.3 1,033,277 + AO356_04580 0.65 +0.2 1,033,277 + AO356_04580 0.65 +1.2 1,033,277 + AO356_04580 0.65 +0.4 1,033,277 + AO356_04580 0.65 +0.5 1,033,277 + AO356_04580 0.65 +1.0 1,033,277 + AO356_04580 0.65 +0.5 1,033,277 + AO356_04580 0.65 -0.2 1,033,278 - AO356_04580 0.65 -1.4 1,033,278 - AO356_04580 0.65 -0.3 1,033,278 - AO356_04580 0.65 -0.7 1,033,278 - AO356_04580 0.65 -0.2 1,033,332 + AO356_04580 0.69 -0.2 1,033,332 + AO356_04580 0.69 +1.9 1,033,332 + AO356_04580 0.69 -0.4 1,033,333 - AO356_04580 0.69 +0.1 1,033,333 - AO356_04580 0.69 -0.7 1,033,333 - AO356_04580 0.69 -0.2 1,033,333 - AO356_04580 0.69 +0.4 1,033,333 - AO356_04580 0.69 -0.1 1,033,569 + AO356_04580 0.83 -0.2 1,033,569 + AO356_04580 0.83 -1.2 1,033,569 + AO356_04580 0.83 +0.8 1,033,570 - AO356_04580 0.83 +0.3 1,033,570 - AO356_04580 0.83 -1.2 1,033,653 + AO356_04580 0.88 -0.1 1,033,654 - AO356_04580 0.89 +0.9 1,033,662 + AO356_04580 0.89 +0.2 1,033,662 + AO356_04580 0.89 -0.0 1,033,662 + AO356_04580 0.89 +0.1 1,033,662 + AO356_04580 0.89 +0.0 1,033,663 - AO356_04580 0.89 +0.7 1,033,663 - AO356_04580 0.89 -0.2 1,033,663 - AO356_04580 0.89 -0.7 1,033,663 - AO356_04580 0.89 -0.5 1,033,764 + +0.4 1,033,764 + -0.5 1,033,764 + -0.6 1,033,764 + -0.7 1,033,764 + +0.7 1,033,765 - -0.3 1,033,765 - -0.5 1,033,765 - +0.4 1,033,808 + -0.5 1,033,808 + +0.5 1,033,809 - +0.2 1,033,809 - +0.3 1,033,809 - -1.0 1,033,827 + +0.6 1,033,827 + -0.1 1,033,827 + -0.7 1,033,828 - -0.1 1,033,828 - -0.3 1,033,968 + AO356_04585 0.36 +1.0 1,034,244 + +0.2 1,034,244 + +0.4 1,034,244 + -0.5 1,034,244 + -1.6 1,034,245 - -0.8 1,034,245 - -0.6 1,034,245 - -0.8 1,034,245 - -0.2 1,034,245 - +0.4 1,034,514 - -0.2 1,034,514 - +0.6 1,034,525 - +1.3 1,034,525 - +0.2 1,034,526 + +0.0 1,034,526 + +0.4 1,034,526 + +1.0 1,034,527 - +0.4 1,034,527 - +0.8 1,034,527 - +1.6 1,034,527 - +1.1 1,034,587 + +0.1 1,034,610 + -0.2 1,034,611 - -0.3 1,034,611 - +0.1 1,034,611 - -0.5 1,034,619 + -0.6
Or see this region's nucleotide sequence