Experiment: Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04095 and AO356_04100 are separated by 9 nucleotides AO356_04100 and AO356_04105 are separated by 52 nucleotides AO356_04105 and AO356_04110 are separated by 223 nucleotides
AO356_04095: AO356_04095 - agmatinase, at 921,127 to 922,077
_04095
AO356_04100: AO356_04100 - ketosteroid isomerase, at 922,087 to 922,494
_04100
AO356_04105: AO356_04105 - nitrate reductase, at 922,547 to 924,055
_04105
AO356_04110: AO356_04110 - sodium:solute symporter, at 924,279 to 925,667
_04110
Position (kb) 922
923
924
925 Strain fitness (log2 ratio) -2
-1
0
1 at 921.550 kb on - strand, within AO356_04095 at 921.703 kb on + strand, within AO356_04095 at 921.704 kb on - strand, within AO356_04095 at 921.704 kb on - strand, within AO356_04095 at 921.832 kb on + strand, within AO356_04095 at 921.833 kb on - strand, within AO356_04095 at 921.975 kb on - strand, within AO356_04095 at 922.036 kb on + strand at 922.037 kb on - strand at 922.037 kb on - strand at 922.053 kb on - strand at 922.162 kb on + strand, within AO356_04100 at 922.162 kb on + strand, within AO356_04100 at 922.163 kb on - strand, within AO356_04100 at 922.201 kb on + strand, within AO356_04100 at 922.201 kb on + strand, within AO356_04100 at 922.202 kb on - strand, within AO356_04100 at 922.237 kb on + strand, within AO356_04100 at 922.492 kb on + strand at 922.492 kb on + strand at 922.552 kb on + strand at 922.552 kb on + strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.558 kb on + strand at 922.558 kb on + strand at 922.564 kb on + strand at 922.564 kb on + strand at 922.565 kb on - strand at 922.565 kb on - strand at 922.565 kb on - strand at 922.565 kb on - strand at 922.565 kb on - strand at 922.565 kb on - strand at 922.565 kb on - strand at 922.669 kb on + strand at 922.669 kb on + strand at 922.669 kb on + strand at 922.670 kb on - strand at 922.670 kb on - strand at 923.036 kb on + strand, within AO356_04105 at 923.036 kb on + strand, within AO356_04105 at 923.036 kb on + strand, within AO356_04105 at 923.037 kb on - strand, within AO356_04105 at 923.177 kb on + strand, within AO356_04105 at 923.205 kb on + strand, within AO356_04105 at 923.259 kb on - strand, within AO356_04105 at 923.259 kb on - strand, within AO356_04105 at 923.259 kb on - strand, within AO356_04105 at 923.384 kb on + strand, within AO356_04105 at 923.384 kb on + strand, within AO356_04105 at 923.384 kb on + strand, within AO356_04105 at 923.385 kb on - strand, within AO356_04105 at 923.402 kb on + strand, within AO356_04105 at 923.403 kb on - strand, within AO356_04105 at 923.501 kb on + strand, within AO356_04105 at 923.501 kb on + strand, within AO356_04105 at 923.502 kb on - strand, within AO356_04105 at 923.502 kb on - strand, within AO356_04105 at 923.720 kb on + strand, within AO356_04105 at 923.720 kb on + strand, within AO356_04105 at 923.721 kb on - strand, within AO356_04105 at 923.721 kb on - strand, within AO356_04105 at 923.721 kb on - strand, within AO356_04105 at 923.942 kb on + strand at 923.942 kb on + strand at 923.943 kb on - strand at 923.943 kb on - strand at 923.982 kb on + strand at 923.982 kb on + strand at 923.983 kb on - strand at 923.984 kb on + strand at 923.984 kb on + strand at 923.984 kb on + strand at 923.985 kb on - strand at 924.028 kb on + strand at 924.249 kb on + strand at 924.250 kb on - strand at 924.250 kb on - strand at 924.250 kb on - strand at 924.292 kb on + strand at 924.292 kb on + strand at 924.292 kb on + strand at 924.292 kb on + strand at 924.293 kb on - strand at 924.309 kb on + strand at 924.309 kb on + strand at 924.310 kb on - strand at 924.310 kb on - strand at 924.310 kb on - strand at 924.340 kb on - strand at 924.372 kb on + strand at 924.372 kb on + strand at 924.373 kb on - strand at 924.373 kb on - strand at 924.408 kb on + strand at 924.409 kb on - strand at 924.409 kb on - strand at 924.409 kb on - strand at 924.409 kb on - strand at 924.412 kb on + strand at 924.412 kb on + strand at 924.412 kb on + strand at 924.412 kb on + strand at 924.413 kb on - strand at 924.413 kb on - strand at 924.413 kb on - strand at 924.474 kb on + strand, within AO356_04110 at 924.480 kb on + strand, within AO356_04110 at 924.576 kb on + strand, within AO356_04110 at 924.576 kb on + strand, within AO356_04110 at 924.577 kb on - strand, within AO356_04110 at 924.577 kb on - strand, within AO356_04110 at 924.607 kb on - strand, within AO356_04110 at 924.607 kb on - strand, within AO356_04110 at 924.651 kb on + strand, within AO356_04110 at 924.651 kb on + strand, within AO356_04110 at 924.651 kb on + strand, within AO356_04110 at 924.651 kb on + strand, within AO356_04110 at 924.651 kb on + strand, within AO356_04110 at 924.652 kb on - strand, within AO356_04110 at 924.652 kb on - strand, within AO356_04110 at 924.652 kb on - strand, within AO356_04110 at 924.652 kb on - strand, within AO356_04110 at 924.765 kb on + strand, within AO356_04110 at 924.765 kb on + strand, within AO356_04110 at 924.765 kb on + strand, within AO356_04110 at 924.765 kb on + strand, within AO356_04110 at 924.765 kb on + strand, within AO356_04110 at 924.766 kb on - strand, within AO356_04110 at 924.915 kb on + strand, within AO356_04110 at 924.915 kb on + strand, within AO356_04110 at 924.916 kb on - strand, within AO356_04110 at 924.957 kb on + strand, within AO356_04110 at 924.957 kb on + strand, within AO356_04110 at 924.958 kb on - strand, within AO356_04110 at 924.958 kb on - strand, within AO356_04110 at 924.969 kb on + strand, within AO356_04110 at 924.969 kb on + strand, within AO356_04110 at 924.970 kb on - strand, within AO356_04110
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml remove 921,550 - AO356_04095 0.44 -0.3 921,703 + AO356_04095 0.61 -0.3 921,704 - AO356_04095 0.61 -0.3 921,704 - AO356_04095 0.61 -0.8 921,832 + AO356_04095 0.74 +0.5 921,833 - AO356_04095 0.74 +0.3 921,975 - AO356_04095 0.89 -0.2 922,036 + +0.1 922,037 - +0.3 922,037 - +0.5 922,053 - -0.8 922,162 + AO356_04100 0.18 -0.2 922,162 + AO356_04100 0.18 +0.7 922,163 - AO356_04100 0.19 -0.6 922,201 + AO356_04100 0.28 +1.5 922,201 + AO356_04100 0.28 -0.6 922,202 - AO356_04100 0.28 +0.8 922,237 + AO356_04100 0.37 +0.8 922,492 + -1.1 922,492 + +0.7 922,552 + -0.1 922,552 + +0.3 922,553 - -0.2 922,553 - +0.7 922,553 - +1.0 922,553 - +0.2 922,553 - -1.0 922,553 - +0.4 922,553 - -0.4 922,553 - +1.0 922,558 + +0.9 922,558 + -0.2 922,564 + -1.1 922,564 + +0.0 922,565 - +0.8 922,565 - -2.2 922,565 - +0.3 922,565 - +0.1 922,565 - +0.1 922,565 - +0.5 922,565 - +0.1 922,669 + -0.7 922,669 + +0.4 922,669 + +0.6 922,670 - +0.8 922,670 - -0.1 923,036 + AO356_04105 0.32 +0.5 923,036 + AO356_04105 0.32 -0.1 923,036 + AO356_04105 0.32 -0.8 923,037 - AO356_04105 0.32 -0.7 923,177 + AO356_04105 0.42 -0.8 923,205 + AO356_04105 0.44 +0.4 923,259 - AO356_04105 0.47 +0.4 923,259 - AO356_04105 0.47 -0.4 923,259 - AO356_04105 0.47 +0.2 923,384 + AO356_04105 0.55 -1.3 923,384 + AO356_04105 0.55 +0.3 923,384 + AO356_04105 0.55 -0.0 923,385 - AO356_04105 0.56 +0.2 923,402 + AO356_04105 0.57 +0.9 923,403 - AO356_04105 0.57 +1.2 923,501 + AO356_04105 0.63 +0.2 923,501 + AO356_04105 0.63 +0.7 923,502 - AO356_04105 0.63 -0.5 923,502 - AO356_04105 0.63 +0.4 923,720 + AO356_04105 0.78 +0.7 923,720 + AO356_04105 0.78 +0.8 923,721 - AO356_04105 0.78 +1.0 923,721 - AO356_04105 0.78 -0.2 923,721 - AO356_04105 0.78 +0.2 923,942 + -0.4 923,942 + -0.2 923,943 - +0.6 923,943 - -0.1 923,982 + +0.4 923,982 + -0.1 923,983 - +1.1 923,984 + -1.1 923,984 + +1.0 923,984 + +0.9 923,985 - +0.5 924,028 + +1.0 924,249 + +0.3 924,250 - -0.8 924,250 - +0.8 924,250 - +0.5 924,292 + -0.5 924,292 + +0.2 924,292 + -0.0 924,292 + +0.4 924,293 - -0.9 924,309 + +0.0 924,309 + -0.5 924,310 - +0.2 924,310 - +0.2 924,310 - +1.0 924,340 - +0.7 924,372 + -0.3 924,372 + -1.0 924,373 - +1.1 924,373 - -1.0 924,408 + -0.2 924,409 - -0.2 924,409 - +0.6 924,409 - -0.2 924,409 - +0.8 924,412 + +0.7 924,412 + -0.8 924,412 + +1.1 924,412 + +0.5 924,413 - -1.4 924,413 - +0.6 924,413 - +1.5 924,474 + AO356_04110 0.14 +0.2 924,480 + AO356_04110 0.14 +0.4 924,576 + AO356_04110 0.21 -0.8 924,576 + AO356_04110 0.21 -0.4 924,577 - AO356_04110 0.21 +0.6 924,577 - AO356_04110 0.21 +0.4 924,607 - AO356_04110 0.24 +0.5 924,607 - AO356_04110 0.24 +0.2 924,651 + AO356_04110 0.27 -1.0 924,651 + AO356_04110 0.27 +1.1 924,651 + AO356_04110 0.27 +0.8 924,651 + AO356_04110 0.27 -0.5 924,651 + AO356_04110 0.27 -1.2 924,652 - AO356_04110 0.27 +0.3 924,652 - AO356_04110 0.27 -0.1 924,652 - AO356_04110 0.27 +1.0 924,652 - AO356_04110 0.27 +0.5 924,765 + AO356_04110 0.35 +1.0 924,765 + AO356_04110 0.35 +0.4 924,765 + AO356_04110 0.35 +0.2 924,765 + AO356_04110 0.35 -0.9 924,765 + AO356_04110 0.35 +0.7 924,766 - AO356_04110 0.35 +0.6 924,915 + AO356_04110 0.46 +0.2 924,915 + AO356_04110 0.46 +0.6 924,916 - AO356_04110 0.46 +0.7 924,957 + AO356_04110 0.49 +1.0 924,957 + AO356_04110 0.49 +1.1 924,958 - AO356_04110 0.49 +0.2 924,958 - AO356_04110 0.49 +1.0 924,969 + AO356_04110 0.50 -0.7 924,969 + AO356_04110 0.50 +0.8 924,970 - AO356_04110 0.50 +0.9
Or see this region's nucleotide sequence