Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03220

Experiment: Doxycycline hyclate 0.0001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_03215 and AO356_03220 are separated by 252 nucleotidesAO356_03220 and AO356_03225 are separated by 56 nucleotidesAO356_03225 and AO356_03230 are separated by 10 nucleotides AO356_03215: AO356_03215 - hypothetical protein, at 714,292 to 715,263 _03215 AO356_03220: AO356_03220 - hypothetical protein, at 715,516 to 715,809 _03220 AO356_03225: AO356_03225 - esterase, at 715,866 to 716,471 _03225 AO356_03230: AO356_03230 - ABC transporter, at 716,482 to 717,165 _03230 Position (kb) 715 716Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 714.525 kb on - strand, within AO356_03215at 714.554 kb on + strand, within AO356_03215at 714.555 kb on - strand, within AO356_03215at 714.613 kb on + strand, within AO356_03215at 714.613 kb on + strand, within AO356_03215at 714.613 kb on + strand, within AO356_03215at 714.613 kb on + strand, within AO356_03215at 714.613 kb on + strand, within AO356_03215at 714.614 kb on - strand, within AO356_03215at 714.614 kb on - strand, within AO356_03215at 714.905 kb on + strand, within AO356_03215at 714.905 kb on + strand, within AO356_03215at 714.905 kb on + strand, within AO356_03215at 714.905 kb on + strand, within AO356_03215at 714.905 kb on + strand, within AO356_03215at 714.906 kb on - strand, within AO356_03215at 714.906 kb on - strand, within AO356_03215at 714.906 kb on - strand, within AO356_03215at 714.906 kb on - strand, within AO356_03215at 714.906 kb on - strand, within AO356_03215at 714.906 kb on - strand, within AO356_03215at 714.932 kb on + strand, within AO356_03215at 714.932 kb on + strand, within AO356_03215at 714.932 kb on + strand, within AO356_03215at 714.932 kb on + strand, within AO356_03215at 714.932 kb on + strand, within AO356_03215at 714.933 kb on - strand, within AO356_03215at 714.933 kb on - strand, within AO356_03215at 714.933 kb on - strand, within AO356_03215at 714.935 kb on + strand, within AO356_03215at 714.935 kb on + strand, within AO356_03215at 714.936 kb on - strand, within AO356_03215at 715.077 kb on - strand, within AO356_03215at 715.077 kb on - strand, within AO356_03215at 715.088 kb on + strand, within AO356_03215at 715.088 kb on + strand, within AO356_03215at 715.088 kb on + strand, within AO356_03215at 715.088 kb on + strand, within AO356_03215at 715.088 kb on + strand, within AO356_03215at 715.088 kb on + strand, within AO356_03215at 715.088 kb on + strand, within AO356_03215at 715.088 kb on + strand, within AO356_03215at 715.088 kb on + strand, within AO356_03215at 715.088 kb on + strand, within AO356_03215at 715.089 kb on - strand, within AO356_03215at 715.089 kb on - strand, within AO356_03215at 715.089 kb on - strand, within AO356_03215at 715.089 kb on - strand, within AO356_03215at 715.089 kb on - strand, within AO356_03215at 715.089 kb on - strand, within AO356_03215at 715.121 kb on + strand, within AO356_03215at 715.121 kb on + strand, within AO356_03215at 715.122 kb on - strand, within AO356_03215at 715.296 kb on - strandat 715.312 kb on + strandat 715.312 kb on + strandat 715.312 kb on + strandat 715.313 kb on - strandat 715.313 kb on - strandat 715.313 kb on - strandat 715.328 kb on - strandat 715.427 kb on + strandat 715.427 kb on + strandat 715.427 kb on + strandat 715.428 kb on - strandat 715.517 kb on + strandat 715.517 kb on + strandat 715.518 kb on - strandat 715.518 kb on - strandat 715.856 kb on + strandat 715.881 kb on + strandat 716.029 kb on + strand, within AO356_03225at 716.029 kb on + strand, within AO356_03225at 716.029 kb on + strand, within AO356_03225at 716.030 kb on - strand, within AO356_03225at 716.053 kb on + strand, within AO356_03225at 716.054 kb on - strand, within AO356_03225at 716.065 kb on + strand, within AO356_03225at 716.066 kb on - strand, within AO356_03225at 716.381 kb on + strand, within AO356_03225at 716.381 kb on + strand, within AO356_03225at 716.381 kb on + strand, within AO356_03225at 716.381 kb on + strand, within AO356_03225at 716.382 kb on - strand, within AO356_03225at 716.382 kb on - strand, within AO356_03225at 716.382 kb on - strand, within AO356_03225at 716.384 kb on + strand, within AO356_03225at 716.385 kb on - strand, within AO356_03225at 716.385 kb on - strand, within AO356_03225at 716.515 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml
remove
714,525 - AO356_03215 0.24 -0.9
714,554 + AO356_03215 0.27 -1.9
714,555 - AO356_03215 0.27 -1.1
714,613 + AO356_03215 0.33 -1.2
714,613 + AO356_03215 0.33 -0.4
714,613 + AO356_03215 0.33 -2.0
714,613 + AO356_03215 0.33 -1.8
714,613 + AO356_03215 0.33 -0.3
714,614 - AO356_03215 0.33 -0.6
714,614 - AO356_03215 0.33 -1.2
714,905 + AO356_03215 0.63 -1.3
714,905 + AO356_03215 0.63 -0.8
714,905 + AO356_03215 0.63 -1.0
714,905 + AO356_03215 0.63 +0.6
714,905 + AO356_03215 0.63 -1.0
714,906 - AO356_03215 0.63 -1.4
714,906 - AO356_03215 0.63 -1.2
714,906 - AO356_03215 0.63 -1.2
714,906 - AO356_03215 0.63 -1.9
714,906 - AO356_03215 0.63 +0.6
714,906 - AO356_03215 0.63 -0.7
714,932 + AO356_03215 0.66 -2.3
714,932 + AO356_03215 0.66 -0.3
714,932 + AO356_03215 0.66 -1.0
714,932 + AO356_03215 0.66 -0.8
714,932 + AO356_03215 0.66 -0.7
714,933 - AO356_03215 0.66 -0.9
714,933 - AO356_03215 0.66 +0.7
714,933 - AO356_03215 0.66 +0.5
714,935 + AO356_03215 0.66 -1.1
714,935 + AO356_03215 0.66 -3.8
714,936 - AO356_03215 0.66 -0.2
715,077 - AO356_03215 0.81 -2.0
715,077 - AO356_03215 0.81 -2.3
715,088 + AO356_03215 0.82 -0.9
715,088 + AO356_03215 0.82 -0.8
715,088 + AO356_03215 0.82 -2.8
715,088 + AO356_03215 0.82 -1.6
715,088 + AO356_03215 0.82 -1.4
715,088 + AO356_03215 0.82 -1.4
715,088 + AO356_03215 0.82 -0.2
715,088 + AO356_03215 0.82 -0.8
715,088 + AO356_03215 0.82 -1.8
715,088 + AO356_03215 0.82 -2.0
715,089 - AO356_03215 0.82 -0.3
715,089 - AO356_03215 0.82 -0.9
715,089 - AO356_03215 0.82 -0.0
715,089 - AO356_03215 0.82 -0.7
715,089 - AO356_03215 0.82 -0.4
715,089 - AO356_03215 0.82 +0.0
715,121 + AO356_03215 0.85 -1.0
715,121 + AO356_03215 0.85 -0.7
715,122 - AO356_03215 0.85 -2.8
715,296 - -1.1
715,312 + -1.0
715,312 + -0.7
715,312 + -0.3
715,313 - -0.3
715,313 - -0.8
715,313 - -0.3
715,328 - -0.6
715,427 + -0.1
715,427 + -1.1
715,427 + -0.3
715,428 - -0.6
715,517 + +0.0
715,517 + +0.3
715,518 - -0.5
715,518 - -0.4
715,856 + -1.0
715,881 + -0.1
716,029 + AO356_03225 0.27 +0.7
716,029 + AO356_03225 0.27 -0.7
716,029 + AO356_03225 0.27 +0.0
716,030 - AO356_03225 0.27 -0.0
716,053 + AO356_03225 0.31 -1.5
716,054 - AO356_03225 0.31 +0.3
716,065 + AO356_03225 0.33 -0.7
716,066 - AO356_03225 0.33 +0.8
716,381 + AO356_03225 0.85 -0.7
716,381 + AO356_03225 0.85 -1.1
716,381 + AO356_03225 0.85 +0.5
716,381 + AO356_03225 0.85 +0.0
716,382 - AO356_03225 0.85 -0.2
716,382 - AO356_03225 0.85 -0.8
716,382 - AO356_03225 0.85 -0.7
716,384 + AO356_03225 0.85 +0.1
716,385 - AO356_03225 0.86 -0.1
716,385 - AO356_03225 0.86 +0.1
716,515 - -1.0

Or see this region's nucleotide sequence