Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02810

Experiment: Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02800 and AO356_02805 are separated by 2 nucleotidesAO356_02805 and AO356_02810 are separated by 64 nucleotidesAO356_02810 and AO356_02815 are separated by 25 nucleotidesAO356_02815 and AO356_02820 are separated by 126 nucleotides AO356_02800: AO356_02800 - transporter, at 617,171 to 617,995 _02800 AO356_02805: AO356_02805 - CrfX protein, at 617,998 to 618,243 _02805 AO356_02810: AO356_02810 - CmaX protein, at 618,308 to 619,303 _02810 AO356_02815: AO356_02815 - ribonuclease activity regulator protein RraA, at 619,329 to 619,820 _02815 AO356_02820: AO356_02820 - EstX protein, at 619,947 to 620,936 _02820 Position (kb) 618 619 620Strain fitness (log2 ratio) -2 -1 0 1at 617.482 kb on + strand, within AO356_02800at 617.483 kb on - strand, within AO356_02800at 617.483 kb on - strand, within AO356_02800at 617.491 kb on + strand, within AO356_02800at 617.492 kb on - strand, within AO356_02800at 617.492 kb on - strand, within AO356_02800at 617.533 kb on - strand, within AO356_02800at 617.640 kb on + strand, within AO356_02800at 617.640 kb on + strand, within AO356_02800at 617.721 kb on - strand, within AO356_02800at 617.934 kb on - strandat 618.024 kb on + strand, within AO356_02805at 618.157 kb on + strand, within AO356_02805at 618.157 kb on + strand, within AO356_02805at 618.243 kb on + strandat 618.243 kb on + strandat 618.243 kb on + strandat 618.244 kb on - strandat 618.427 kb on + strand, within AO356_02810at 618.428 kb on - strand, within AO356_02810at 618.431 kb on + strand, within AO356_02810at 618.432 kb on - strand, within AO356_02810at 618.432 kb on - strand, within AO356_02810at 618.432 kb on - strand, within AO356_02810at 618.432 kb on - strand, within AO356_02810at 618.615 kb on + strand, within AO356_02810at 618.751 kb on + strand, within AO356_02810at 618.753 kb on + strand, within AO356_02810at 618.753 kb on + strand, within AO356_02810at 618.754 kb on - strand, within AO356_02810at 618.754 kb on - strand, within AO356_02810at 618.754 kb on - strand, within AO356_02810at 618.840 kb on + strand, within AO356_02810at 618.840 kb on + strand, within AO356_02810at 618.840 kb on + strand, within AO356_02810at 618.840 kb on + strand, within AO356_02810at 618.841 kb on - strand, within AO356_02810at 618.841 kb on - strand, within AO356_02810at 618.850 kb on + strand, within AO356_02810at 618.850 kb on + strand, within AO356_02810at 618.850 kb on + strand, within AO356_02810at 618.851 kb on - strand, within AO356_02810at 618.851 kb on - strand, within AO356_02810at 618.851 kb on - strand, within AO356_02810at 618.852 kb on + strand, within AO356_02810at 618.852 kb on + strand, within AO356_02810at 618.852 kb on + strand, within AO356_02810at 618.852 kb on + strand, within AO356_02810at 618.852 kb on + strand, within AO356_02810at 618.852 kb on + strand, within AO356_02810at 618.852 kb on + strand, within AO356_02810at 618.852 kb on + strand, within AO356_02810at 618.852 kb on + strand, within AO356_02810at 618.853 kb on - strand, within AO356_02810at 618.853 kb on - strand, within AO356_02810at 618.853 kb on - strand, within AO356_02810at 618.853 kb on - strand, within AO356_02810at 618.853 kb on - strand, within AO356_02810at 618.853 kb on - strand, within AO356_02810at 619.385 kb on - strand, within AO356_02815at 619.390 kb on + strand, within AO356_02815at 619.390 kb on + strand, within AO356_02815at 619.390 kb on + strand, within AO356_02815at 619.390 kb on + strand, within AO356_02815at 619.390 kb on + strand, within AO356_02815at 619.391 kb on - strand, within AO356_02815at 619.391 kb on - strand, within AO356_02815at 619.391 kb on - strand, within AO356_02815at 619.391 kb on - strand, within AO356_02815at 619.391 kb on - strand, within AO356_02815at 619.391 kb on - strand, within AO356_02815at 619.540 kb on + strand, within AO356_02815at 619.540 kb on + strand, within AO356_02815at 619.540 kb on + strand, within AO356_02815at 619.541 kb on - strand, within AO356_02815at 619.810 kb on + strandat 619.810 kb on + strandat 619.810 kb on + strandat 619.811 kb on - strandat 619.811 kb on - strandat 619.811 kb on - strandat 619.811 kb on - strandat 619.895 kb on + strandat 619.901 kb on - strandat 620.285 kb on + strand, within AO356_02820at 620.285 kb on + strand, within AO356_02820at 620.286 kb on - strand, within AO356_02820at 620.286 kb on - strand, within AO356_02820at 620.286 kb on - strand, within AO356_02820

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml
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617,482 + AO356_02800 0.38 -0.6
617,483 - AO356_02800 0.38 +0.2
617,483 - AO356_02800 0.38 +1.5
617,491 + AO356_02800 0.39 -0.2
617,492 - AO356_02800 0.39 -1.0
617,492 - AO356_02800 0.39 +1.7
617,533 - AO356_02800 0.44 -0.3
617,640 + AO356_02800 0.57 -1.0
617,640 + AO356_02800 0.57 -1.5
617,721 - AO356_02800 0.67 +0.4
617,934 - +1.6
618,024 + AO356_02805 0.11 -1.2
618,157 + AO356_02805 0.65 -1.5
618,157 + AO356_02805 0.65 -0.0
618,243 + -1.7
618,243 + -0.0
618,243 + -0.9
618,244 - -0.9
618,427 + AO356_02810 0.12 -2.5
618,428 - AO356_02810 0.12 -0.2
618,431 + AO356_02810 0.12 -1.9
618,432 - AO356_02810 0.12 -0.1
618,432 - AO356_02810 0.12 +0.6
618,432 - AO356_02810 0.12 -0.4
618,432 - AO356_02810 0.12 +0.2
618,615 + AO356_02810 0.31 -0.1
618,751 + AO356_02810 0.44 -1.2
618,753 + AO356_02810 0.45 +0.9
618,753 + AO356_02810 0.45 -0.1
618,754 - AO356_02810 0.45 +0.4
618,754 - AO356_02810 0.45 -0.2
618,754 - AO356_02810 0.45 -0.2
618,840 + AO356_02810 0.53 -1.8
618,840 + AO356_02810 0.53 -1.1
618,840 + AO356_02810 0.53 -0.1
618,840 + AO356_02810 0.53 -1.4
618,841 - AO356_02810 0.54 -0.2
618,841 - AO356_02810 0.54 -0.8
618,850 + AO356_02810 0.54 -0.6
618,850 + AO356_02810 0.54 -0.9
618,850 + AO356_02810 0.54 -2.0
618,851 - AO356_02810 0.55 -0.5
618,851 - AO356_02810 0.55 +0.4
618,851 - AO356_02810 0.55 -0.2
618,852 + AO356_02810 0.55 -0.6
618,852 + AO356_02810 0.55 +0.4
618,852 + AO356_02810 0.55 -0.7
618,852 + AO356_02810 0.55 -0.3
618,852 + AO356_02810 0.55 -2.0
618,852 + AO356_02810 0.55 -1.0
618,852 + AO356_02810 0.55 -1.8
618,852 + AO356_02810 0.55 -0.0
618,852 + AO356_02810 0.55 -2.7
618,853 - AO356_02810 0.55 +0.2
618,853 - AO356_02810 0.55 -0.8
618,853 - AO356_02810 0.55 -0.7
618,853 - AO356_02810 0.55 -0.5
618,853 - AO356_02810 0.55 +0.1
618,853 - AO356_02810 0.55 -0.8
619,385 - AO356_02815 0.11 -2.2
619,390 + AO356_02815 0.12 -0.1
619,390 + AO356_02815 0.12 -1.2
619,390 + AO356_02815 0.12 -1.1
619,390 + AO356_02815 0.12 -1.1
619,390 + AO356_02815 0.12 -0.9
619,391 - AO356_02815 0.13 -1.2
619,391 - AO356_02815 0.13 +0.6
619,391 - AO356_02815 0.13 +0.3
619,391 - AO356_02815 0.13 +0.2
619,391 - AO356_02815 0.13 +0.8
619,391 - AO356_02815 0.13 -0.0
619,540 + AO356_02815 0.43 -1.1
619,540 + AO356_02815 0.43 +0.1
619,540 + AO356_02815 0.43 -1.6
619,541 - AO356_02815 0.43 +0.0
619,810 + -1.5
619,810 + +0.7
619,810 + -1.2
619,811 - +0.4
619,811 - -0.3
619,811 - -1.4
619,811 - -0.7
619,895 + -0.8
619,901 - +0.4
620,285 + AO356_02820 0.34 +0.4
620,285 + AO356_02820 0.34 +0.6
620,286 - AO356_02820 0.34 -0.5
620,286 - AO356_02820 0.34 +0.2
620,286 - AO356_02820 0.34 -0.7

Or see this region's nucleotide sequence