Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02195

Experiment: Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02190 and AO356_02195 are separated by 201 nucleotidesAO356_02195 and AO356_02200 are separated by 109 nucleotidesAO356_02200 and AO356_02205 are separated by 184 nucleotides AO356_02190: AO356_02190 - hypothetical protein, at 471,421 to 472,110 _02190 AO356_02195: AO356_02195 - phosphatase, at 472,312 to 472,932 _02195 AO356_02200: AO356_02200 - chromosome partitioning protein ParA, at 473,042 to 473,305 _02200 AO356_02205: AO356_02205 - NADPH-dependent 7-cyano-7-deazaguanine reductase, at 473,490 to 474,320 _02205 Position (kb) 472 473Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 471.476 kb on + strandat 471.476 kb on + strandat 471.497 kb on + strand, within AO356_02190at 471.498 kb on - strand, within AO356_02190at 471.498 kb on - strand, within AO356_02190at 471.498 kb on - strand, within AO356_02190at 471.498 kb on - strand, within AO356_02190at 471.498 kb on - strand, within AO356_02190at 471.498 kb on - strand, within AO356_02190at 471.597 kb on + strand, within AO356_02190at 471.598 kb on - strand, within AO356_02190at 471.598 kb on - strand, within AO356_02190at 471.598 kb on - strand, within AO356_02190at 471.599 kb on + strand, within AO356_02190at 471.599 kb on + strand, within AO356_02190at 471.600 kb on - strand, within AO356_02190at 471.618 kb on - strand, within AO356_02190at 471.618 kb on - strand, within AO356_02190at 471.683 kb on + strand, within AO356_02190at 471.683 kb on + strand, within AO356_02190at 471.684 kb on - strand, within AO356_02190at 471.684 kb on - strand, within AO356_02190at 471.684 kb on - strand, within AO356_02190at 471.684 kb on - strand, within AO356_02190at 471.932 kb on + strand, within AO356_02190at 471.932 kb on + strand, within AO356_02190at 471.932 kb on + strand, within AO356_02190at 471.933 kb on - strand, within AO356_02190at 471.933 kb on - strand, within AO356_02190at 471.933 kb on - strand, within AO356_02190at 471.938 kb on + strand, within AO356_02190at 471.965 kb on + strand, within AO356_02190at 471.965 kb on + strand, within AO356_02190at 471.965 kb on + strand, within AO356_02190at 471.965 kb on + strand, within AO356_02190at 471.965 kb on + strand, within AO356_02190at 471.966 kb on - strand, within AO356_02190at 471.966 kb on - strand, within AO356_02190at 471.966 kb on - strand, within AO356_02190at 472.090 kb on + strandat 472.090 kb on + strandat 472.161 kb on - strandat 472.161 kb on - strandat 472.169 kb on + strandat 472.170 kb on - strandat 472.172 kb on + strandat 472.173 kb on - strandat 472.173 kb on - strandat 472.173 kb on - strandat 472.173 kb on - strandat 472.173 kb on - strandat 472.173 kb on - strandat 472.173 kb on - strandat 472.175 kb on - strandat 472.175 kb on - strandat 472.175 kb on - strandat 472.175 kb on - strandat 472.221 kb on - strandat 472.283 kb on - strandat 472.294 kb on + strandat 472.294 kb on + strandat 472.361 kb on + strandat 472.491 kb on + strand, within AO356_02195at 472.595 kb on - strand, within AO356_02195at 472.718 kb on + strand, within AO356_02195at 472.718 kb on + strand, within AO356_02195at 472.719 kb on - strand, within AO356_02195at 472.915 kb on - strandat 472.915 kb on - strandat 472.965 kb on - strandat 472.965 kb on - strandat 472.965 kb on - strandat 472.970 kb on + strandat 472.970 kb on + strandat 473.021 kb on - strandat 473.027 kb on - strandat 473.035 kb on + strandat 473.331 kb on + strandat 473.331 kb on + strandat 473.331 kb on + strandat 473.331 kb on + strandat 473.332 kb on - strandat 473.332 kb on - strandat 473.332 kb on - strandat 473.335 kb on + strandat 473.336 kb on - strandat 473.336 kb on - strandat 473.336 kb on - strandat 473.336 kb on - strandat 473.348 kb on + strandat 473.349 kb on - strandat 473.407 kb on + strandat 473.407 kb on + strandat 473.408 kb on - strandat 473.408 kb on - strandat 473.408 kb on - strandat 473.491 kb on + strandat 473.491 kb on + strandat 473.571 kb on + strandat 473.571 kb on + strandat 473.571 kb on + strandat 473.571 kb on + strandat 473.572 kb on - strandat 473.572 kb on - strandat 473.572 kb on - strandat 473.584 kb on + strand, within AO356_02205at 473.584 kb on + strand, within AO356_02205at 473.686 kb on + strand, within AO356_02205at 473.687 kb on - strand, within AO356_02205at 473.687 kb on - strand, within AO356_02205at 473.857 kb on + strand, within AO356_02205

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml
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471,476 + +0.9
471,476 + -0.1
471,497 + AO356_02190 0.11 -1.4
471,498 - AO356_02190 0.11 -0.9
471,498 - AO356_02190 0.11 -0.6
471,498 - AO356_02190 0.11 -1.5
471,498 - AO356_02190 0.11 -2.0
471,498 - AO356_02190 0.11 -1.8
471,498 - AO356_02190 0.11 -0.2
471,597 + AO356_02190 0.26 -1.7
471,598 - AO356_02190 0.26 -0.4
471,598 - AO356_02190 0.26 -0.1
471,598 - AO356_02190 0.26 -2.4
471,599 + AO356_02190 0.26 -0.6
471,599 + AO356_02190 0.26 -1.7
471,600 - AO356_02190 0.26 -0.2
471,618 - AO356_02190 0.29 -1.1
471,618 - AO356_02190 0.29 -1.2
471,683 + AO356_02190 0.38 -0.9
471,683 + AO356_02190 0.38 -2.5
471,684 - AO356_02190 0.38 -2.1
471,684 - AO356_02190 0.38 -0.5
471,684 - AO356_02190 0.38 -0.8
471,684 - AO356_02190 0.38 -1.5
471,932 + AO356_02190 0.74 -0.8
471,932 + AO356_02190 0.74 -0.2
471,932 + AO356_02190 0.74 -0.4
471,933 - AO356_02190 0.74 +0.0
471,933 - AO356_02190 0.74 +0.6
471,933 - AO356_02190 0.74 -1.3
471,938 + AO356_02190 0.75 -2.1
471,965 + AO356_02190 0.79 -0.9
471,965 + AO356_02190 0.79 -1.9
471,965 + AO356_02190 0.79 -1.5
471,965 + AO356_02190 0.79 -1.4
471,965 + AO356_02190 0.79 -1.1
471,966 - AO356_02190 0.79 -0.9
471,966 - AO356_02190 0.79 -2.3
471,966 - AO356_02190 0.79 -1.1
472,090 + -0.3
472,090 + -0.3
472,161 - +0.6
472,161 - +0.1
472,169 + -1.7
472,170 - +1.5
472,172 + -2.0
472,173 - +0.7
472,173 - +0.3
472,173 - -1.3
472,173 - +0.2
472,173 - -0.1
472,173 - -0.6
472,173 - +0.7
472,175 - +0.1
472,175 - +0.1
472,175 - +1.1
472,175 - +1.6
472,221 - +0.1
472,283 - +0.1
472,294 + +0.4
472,294 + +0.4
472,361 + -3.0
472,491 + AO356_02195 0.29 +0.4
472,595 - AO356_02195 0.46 +0.4
472,718 + AO356_02195 0.65 -0.7
472,718 + AO356_02195 0.65 +0.6
472,719 - AO356_02195 0.66 +0.9
472,915 - +1.5
472,915 - +0.5
472,965 - -0.3
472,965 - +0.3
472,965 - +0.4
472,970 + -0.3
472,970 + -0.1
473,021 - -0.4
473,027 - -0.3
473,035 + +0.4
473,331 + -0.2
473,331 + +1.5
473,331 + -0.1
473,331 + +0.7
473,332 - -0.5
473,332 - +0.3
473,332 - +0.5
473,335 + -1.0
473,336 - +0.2
473,336 - -0.1
473,336 - +0.7
473,336 - -1.4
473,348 + +1.0
473,349 - +0.8
473,407 + -0.1
473,407 + -1.0
473,408 - +0.3
473,408 - +0.2
473,408 - -0.6
473,491 + -0.1
473,491 + +0.9
473,571 + +0.9
473,571 + +1.2
473,571 + +0.5
473,571 + +1.2
473,572 - +0.6
473,572 - +1.2
473,572 - +0.7
473,584 + AO356_02205 0.11 +1.1
473,584 + AO356_02205 0.11 +0.5
473,686 + AO356_02205 0.24 +1.8
473,687 - AO356_02205 0.24 +2.3
473,687 - AO356_02205 0.24 +0.7
473,857 + AO356_02205 0.44 +1.7

Or see this region's nucleotide sequence