Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01280

Experiment: Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01275 and AO356_01280 are separated by 112 nucleotidesAO356_01280 and AO356_01285 are separated by 135 nucleotidesAO356_01285 and AO356_01290 are separated by 78 nucleotides AO356_01275: AO356_01275 - GntR family transcriptional regulator, at 296,879 to 298,306 _01275 AO356_01280: AO356_01280 - hypothetical protein, at 298,419 to 298,841 _01280 AO356_01285: AO356_01285 - oxidoreductase, at 298,977 to 299,723 _01285 AO356_01290: AO356_01290 - peroxidase, at 299,802 to 300,680 _01290 Position (kb) 298 299Strain fitness (log2 ratio) -2 -1 0 1 2at 297.488 kb on + strand, within AO356_01275at 297.488 kb on + strand, within AO356_01275at 297.489 kb on - strand, within AO356_01275at 297.489 kb on - strand, within AO356_01275at 297.489 kb on - strand, within AO356_01275at 297.489 kb on - strand, within AO356_01275at 297.489 kb on - strand, within AO356_01275at 297.489 kb on - strand, within AO356_01275at 297.560 kb on - strand, within AO356_01275at 297.573 kb on + strand, within AO356_01275at 297.740 kb on + strand, within AO356_01275at 297.944 kb on + strand, within AO356_01275at 298.038 kb on - strand, within AO356_01275at 298.218 kb on - strandat 298.218 kb on - strandat 298.239 kb on + strandat 298.239 kb on + strandat 298.330 kb on + strandat 298.330 kb on + strandat 298.331 kb on - strandat 298.333 kb on + strandat 298.333 kb on + strandat 298.333 kb on + strandat 298.333 kb on + strandat 298.333 kb on + strandat 298.334 kb on - strandat 298.334 kb on - strandat 298.353 kb on + strandat 298.353 kb on + strandat 298.353 kb on + strandat 298.353 kb on + strandat 298.354 kb on - strandat 298.358 kb on + strandat 298.359 kb on - strandat 298.401 kb on + strandat 298.401 kb on + strandat 298.401 kb on + strandat 298.402 kb on - strandat 298.402 kb on - strandat 298.406 kb on + strandat 298.426 kb on - strandat 298.486 kb on + strand, within AO356_01280at 298.486 kb on + strand, within AO356_01280at 298.486 kb on + strand, within AO356_01280at 298.486 kb on + strand, within AO356_01280at 298.487 kb on - strand, within AO356_01280at 298.487 kb on - strand, within AO356_01280at 298.487 kb on - strand, within AO356_01280at 298.490 kb on - strand, within AO356_01280at 298.490 kb on - strand, within AO356_01280at 298.512 kb on + strand, within AO356_01280at 298.512 kb on + strand, within AO356_01280at 298.512 kb on + strand, within AO356_01280at 298.513 kb on - strand, within AO356_01280at 298.513 kb on - strand, within AO356_01280at 298.513 kb on - strand, within AO356_01280at 298.524 kb on - strand, within AO356_01280at 298.524 kb on - strand, within AO356_01280at 298.530 kb on + strand, within AO356_01280at 298.530 kb on + strand, within AO356_01280at 298.530 kb on + strand, within AO356_01280at 298.530 kb on + strand, within AO356_01280at 298.531 kb on - strand, within AO356_01280at 298.531 kb on - strand, within AO356_01280at 298.531 kb on - strand, within AO356_01280at 298.531 kb on - strand, within AO356_01280at 298.542 kb on + strand, within AO356_01280at 298.558 kb on + strand, within AO356_01280at 298.558 kb on + strand, within AO356_01280at 298.597 kb on + strand, within AO356_01280at 298.597 kb on + strand, within AO356_01280at 298.598 kb on - strand, within AO356_01280at 298.598 kb on - strand, within AO356_01280at 298.658 kb on + strand, within AO356_01280at 298.661 kb on + strand, within AO356_01280at 298.661 kb on + strand, within AO356_01280at 298.661 kb on + strand, within AO356_01280at 298.661 kb on + strand, within AO356_01280at 298.661 kb on + strand, within AO356_01280at 298.662 kb on - strand, within AO356_01280at 298.672 kb on + strand, within AO356_01280at 298.672 kb on + strand, within AO356_01280at 298.673 kb on - strand, within AO356_01280at 298.770 kb on - strand, within AO356_01280at 298.808 kb on - strandat 298.824 kb on + strandat 298.824 kb on + strandat 298.824 kb on + strandat 298.825 kb on - strandat 298.825 kb on - strandat 298.825 kb on - strandat 298.825 kb on - strandat 298.825 kb on - strandat 298.878 kb on - strandat 298.909 kb on + strandat 299.045 kb on + strandat 299.046 kb on - strandat 299.152 kb on + strand, within AO356_01285at 299.152 kb on + strand, within AO356_01285at 299.152 kb on + strand, within AO356_01285at 299.153 kb on - strand, within AO356_01285at 299.153 kb on - strand, within AO356_01285at 299.153 kb on - strand, within AO356_01285at 299.158 kb on + strand, within AO356_01285at 299.159 kb on - strand, within AO356_01285at 299.159 kb on - strand, within AO356_01285at 299.159 kb on - strand, within AO356_01285at 299.159 kb on - strand, within AO356_01285at 299.159 kb on - strand, within AO356_01285at 299.263 kb on + strand, within AO356_01285at 299.264 kb on - strand, within AO356_01285at 299.399 kb on + strand, within AO356_01285at 299.399 kb on + strand, within AO356_01285at 299.399 kb on + strand, within AO356_01285at 299.400 kb on - strand, within AO356_01285at 299.465 kb on + strand, within AO356_01285at 299.466 kb on - strand, within AO356_01285at 299.466 kb on - strand, within AO356_01285at 299.626 kb on + strand, within AO356_01285at 299.627 kb on - strand, within AO356_01285

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml
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297,488 + AO356_01275 0.43 -0.8
297,488 + AO356_01275 0.43 +0.7
297,489 - AO356_01275 0.43 -0.7
297,489 - AO356_01275 0.43 +0.6
297,489 - AO356_01275 0.43 +0.0
297,489 - AO356_01275 0.43 +0.4
297,489 - AO356_01275 0.43 +0.6
297,489 - AO356_01275 0.43 +1.6
297,560 - AO356_01275 0.48 +0.9
297,573 + AO356_01275 0.49 +0.4
297,740 + AO356_01275 0.60 +0.3
297,944 + AO356_01275 0.75 -1.5
298,038 - AO356_01275 0.81 +0.6
298,218 - +0.1
298,218 - -0.9
298,239 + +0.9
298,239 + -0.2
298,330 + -0.6
298,330 + -0.3
298,331 - +0.2
298,333 + +0.8
298,333 + -1.2
298,333 + +0.2
298,333 + +0.4
298,333 + +1.1
298,334 - +0.6
298,334 - +0.9
298,353 + -0.4
298,353 + +0.2
298,353 + +0.4
298,353 + +0.4
298,354 - +0.2
298,358 + +0.8
298,359 - +0.7
298,401 + +0.1
298,401 + +0.8
298,401 + +2.0
298,402 - -1.8
298,402 - +0.2
298,406 + -0.3
298,426 - -0.2
298,486 + AO356_01280 0.16 +0.4
298,486 + AO356_01280 0.16 -0.8
298,486 + AO356_01280 0.16 +0.4
298,486 + AO356_01280 0.16 -0.4
298,487 - AO356_01280 0.16 +0.6
298,487 - AO356_01280 0.16 -0.3
298,487 - AO356_01280 0.16 -0.0
298,490 - AO356_01280 0.17 -0.0
298,490 - AO356_01280 0.17 +0.6
298,512 + AO356_01280 0.22 +1.4
298,512 + AO356_01280 0.22 +0.6
298,512 + AO356_01280 0.22 +1.3
298,513 - AO356_01280 0.22 +0.2
298,513 - AO356_01280 0.22 +0.1
298,513 - AO356_01280 0.22 +0.4
298,524 - AO356_01280 0.25 +0.5
298,524 - AO356_01280 0.25 +0.1
298,530 + AO356_01280 0.26 +0.5
298,530 + AO356_01280 0.26 -0.4
298,530 + AO356_01280 0.26 +0.3
298,530 + AO356_01280 0.26 -0.6
298,531 - AO356_01280 0.26 -0.4
298,531 - AO356_01280 0.26 +0.1
298,531 - AO356_01280 0.26 +1.1
298,531 - AO356_01280 0.26 -0.7
298,542 + AO356_01280 0.29 +0.6
298,558 + AO356_01280 0.33 +0.1
298,558 + AO356_01280 0.33 +0.3
298,597 + AO356_01280 0.42 +1.5
298,597 + AO356_01280 0.42 +0.0
298,598 - AO356_01280 0.42 +0.8
298,598 - AO356_01280 0.42 -0.5
298,658 + AO356_01280 0.57 +1.1
298,661 + AO356_01280 0.57 +0.4
298,661 + AO356_01280 0.57 -0.3
298,661 + AO356_01280 0.57 -0.2
298,661 + AO356_01280 0.57 -0.3
298,661 + AO356_01280 0.57 +0.3
298,662 - AO356_01280 0.57 -0.2
298,672 + AO356_01280 0.60 +0.1
298,672 + AO356_01280 0.60 -0.1
298,673 - AO356_01280 0.60 -0.4
298,770 - AO356_01280 0.83 +0.3
298,808 - +1.0
298,824 + +0.9
298,824 + -0.2
298,824 + -0.2
298,825 - +1.2
298,825 - +0.3
298,825 - -1.3
298,825 - +0.1
298,825 - -0.1
298,878 - +0.1
298,909 + +0.1
299,045 + -1.0
299,046 - +0.6
299,152 + AO356_01285 0.23 +0.2
299,152 + AO356_01285 0.23 +0.3
299,152 + AO356_01285 0.23 +0.3
299,153 - AO356_01285 0.24 +0.2
299,153 - AO356_01285 0.24 +0.1
299,153 - AO356_01285 0.24 +0.8
299,158 + AO356_01285 0.24 -0.9
299,159 - AO356_01285 0.24 +0.2
299,159 - AO356_01285 0.24 +0.6
299,159 - AO356_01285 0.24 +0.1
299,159 - AO356_01285 0.24 +1.8
299,159 - AO356_01285 0.24 +0.2
299,263 + AO356_01285 0.38 +1.1
299,264 - AO356_01285 0.38 +0.5
299,399 + AO356_01285 0.56 +1.3
299,399 + AO356_01285 0.56 -0.0
299,399 + AO356_01285 0.56 +0.3
299,400 - AO356_01285 0.57 +0.1
299,465 + AO356_01285 0.65 +1.1
299,466 - AO356_01285 0.65 -0.6
299,466 - AO356_01285 0.65 -0.0
299,626 + AO356_01285 0.87 +0.5
299,627 - AO356_01285 0.87 +0.3

Or see this region's nucleotide sequence