Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00770

Experiment: Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00765 and AO356_00770 are separated by 178 nucleotidesAO356_00770 and AO356_00775 are separated by 12 nucleotides AO356_00765: AO356_00765 - glycosyl transferase, at 170,855 to 173,302 _00765 AO356_00770: AO356_00770 - glycosyl transferase, at 173,481 to 175,937 _00770 AO356_00775: AO356_00775 - glycosyl transferase family 2, at 175,950 to 176,972 _00775 Position (kb) 173 174 175 176Strain fitness (log2 ratio) -2 -1 0 1 2at 172.568 kb on + strand, within AO356_00765at 172.568 kb on - strand, within AO356_00765at 172.682 kb on + strand, within AO356_00765at 172.682 kb on + strand, within AO356_00765at 172.683 kb on - strand, within AO356_00765at 172.937 kb on + strand, within AO356_00765at 172.938 kb on - strand, within AO356_00765at 172.938 kb on - strand, within AO356_00765at 172.938 kb on - strand, within AO356_00765at 173.252 kb on + strandat 173.252 kb on + strandat 173.551 kb on - strandat 173.551 kb on - strandat 173.561 kb on - strandat 173.561 kb on - strandat 173.561 kb on - strandat 173.599 kb on - strandat 173.651 kb on - strandat 173.904 kb on + strand, within AO356_00770at 173.919 kb on + strand, within AO356_00770at 173.932 kb on - strand, within AO356_00770at 174.085 kb on - strand, within AO356_00770at 174.085 kb on - strand, within AO356_00770at 174.195 kb on + strand, within AO356_00770at 174.195 kb on + strand, within AO356_00770at 174.195 kb on + strand, within AO356_00770at 174.195 kb on + strand, within AO356_00770at 174.195 kb on + strand, within AO356_00770at 174.195 kb on + strand, within AO356_00770at 174.196 kb on - strand, within AO356_00770at 174.196 kb on - strand, within AO356_00770at 174.196 kb on - strand, within AO356_00770at 174.196 kb on - strand, within AO356_00770at 174.234 kb on + strand, within AO356_00770at 174.234 kb on + strand, within AO356_00770at 174.234 kb on + strand, within AO356_00770at 174.234 kb on + strand, within AO356_00770at 174.235 kb on - strand, within AO356_00770at 174.235 kb on - strand, within AO356_00770at 174.235 kb on - strand, within AO356_00770at 174.235 kb on - strand, within AO356_00770at 174.236 kb on + strand, within AO356_00770at 174.236 kb on + strand, within AO356_00770at 174.237 kb on - strand, within AO356_00770at 174.246 kb on + strand, within AO356_00770at 174.246 kb on + strand, within AO356_00770at 174.247 kb on - strand, within AO356_00770at 174.247 kb on - strand, within AO356_00770at 174.247 kb on - strand, within AO356_00770at 174.248 kb on + strand, within AO356_00770at 174.248 kb on + strand, within AO356_00770at 174.249 kb on - strand, within AO356_00770at 174.249 kb on - strand, within AO356_00770at 174.249 kb on - strand, within AO356_00770at 174.249 kb on - strand, within AO356_00770at 174.615 kb on + strand, within AO356_00770at 174.615 kb on + strand, within AO356_00770at 174.696 kb on + strand, within AO356_00770at 174.697 kb on - strand, within AO356_00770at 174.697 kb on - strand, within AO356_00770at 174.697 kb on - strand, within AO356_00770at 174.806 kb on + strand, within AO356_00770at 174.831 kb on + strand, within AO356_00770at 175.008 kb on + strand, within AO356_00770at 175.018 kb on - strand, within AO356_00770at 175.018 kb on - strand, within AO356_00770at 175.018 kb on - strand, within AO356_00770at 175.158 kb on + strand, within AO356_00770at 175.158 kb on + strand, within AO356_00770at 175.158 kb on + strand, within AO356_00770at 175.158 kb on + strand, within AO356_00770at 175.161 kb on + strand, within AO356_00770at 175.161 kb on + strand, within AO356_00770at 175.161 kb on + strand, within AO356_00770at 175.213 kb on - strand, within AO356_00770at 175.268 kb on + strand, within AO356_00770at 175.269 kb on - strand, within AO356_00770at 175.335 kb on + strand, within AO356_00770at 175.335 kb on + strand, within AO356_00770at 175.501 kb on - strand, within AO356_00770at 175.615 kb on - strand, within AO356_00770at 175.615 kb on - strand, within AO356_00770at 175.615 kb on - strand, within AO356_00770at 175.695 kb on + strandat 175.695 kb on + strandat 175.696 kb on - strandat 175.785 kb on - strandat 175.878 kb on + strandat 175.878 kb on + strandat 175.879 kb on - strandat 175.879 kb on - strandat 175.879 kb on - strandat 175.879 kb on - strandat 176.050 kb on + strandat 176.050 kb on + strandat 176.051 kb on - strandat 176.051 kb on - strandat 176.073 kb on + strand, within AO356_00775at 176.073 kb on + strand, within AO356_00775at 176.073 kb on + strand, within AO356_00775at 176.073 kb on + strand, within AO356_00775at 176.073 kb on + strand, within AO356_00775at 176.073 kb on + strand, within AO356_00775at 176.073 kb on + strand, within AO356_00775at 176.073 kb on + strand, within AO356_00775at 176.074 kb on - strand, within AO356_00775at 176.074 kb on - strand, within AO356_00775at 176.074 kb on - strand, within AO356_00775at 176.074 kb on - strand, within AO356_00775at 176.074 kb on - strand, within AO356_00775at 176.074 kb on - strand, within AO356_00775at 176.074 kb on - strand, within AO356_00775at 176.129 kb on + strand, within AO356_00775at 176.129 kb on + strand, within AO356_00775at 176.316 kb on + strand, within AO356_00775at 176.316 kb on + strand, within AO356_00775at 176.316 kb on + strand, within AO356_00775at 176.316 kb on + strand, within AO356_00775at 176.316 kb on + strand, within AO356_00775at 176.316 kb on + strand, within AO356_00775at 176.316 kb on + strand, within AO356_00775at 176.317 kb on - strand, within AO356_00775at 176.682 kb on + strand, within AO356_00775at 176.682 kb on + strand, within AO356_00775at 176.683 kb on - strand, within AO356_00775at 176.683 kb on - strand, within AO356_00775at 176.683 kb on - strand, within AO356_00775at 176.688 kb on + strand, within AO356_00775at 176.688 kb on + strand, within AO356_00775at 176.688 kb on + strand, within AO356_00775at 176.689 kb on - strand, within AO356_00775at 176.689 kb on - strand, within AO356_00775at 176.689 kb on - strand, within AO356_00775at 176.691 kb on + strand, within AO356_00775at 176.772 kb on + strand, within AO356_00775at 176.773 kb on - strand, within AO356_00775at 176.781 kb on + strand, within AO356_00775at 176.931 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml
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172,568 + AO356_00765 0.70 +0.7
172,568 - AO356_00765 0.70 +1.1
172,682 + AO356_00765 0.75 -0.1
172,682 + AO356_00765 0.75 +0.2
172,683 - AO356_00765 0.75 -0.3
172,937 + AO356_00765 0.85 -0.3
172,938 - AO356_00765 0.85 -0.7
172,938 - AO356_00765 0.85 +0.2
172,938 - AO356_00765 0.85 +0.3
173,252 + +0.5
173,252 + -0.2
173,551 - +0.2
173,551 - +0.8
173,561 - -0.8
173,561 - -0.9
173,561 - +1.8
173,599 - -0.9
173,651 - +0.4
173,904 + AO356_00770 0.17 -0.1
173,919 + AO356_00770 0.18 -1.3
173,932 - AO356_00770 0.18 +0.1
174,085 - AO356_00770 0.25 -0.3
174,085 - AO356_00770 0.25 +0.1
174,195 + AO356_00770 0.29 +0.3
174,195 + AO356_00770 0.29 -0.3
174,195 + AO356_00770 0.29 -0.8
174,195 + AO356_00770 0.29 +0.8
174,195 + AO356_00770 0.29 +1.1
174,195 + AO356_00770 0.29 -0.3
174,196 - AO356_00770 0.29 +0.5
174,196 - AO356_00770 0.29 +1.0
174,196 - AO356_00770 0.29 +1.1
174,196 - AO356_00770 0.29 -0.2
174,234 + AO356_00770 0.31 +0.1
174,234 + AO356_00770 0.31 +1.5
174,234 + AO356_00770 0.31 +0.0
174,234 + AO356_00770 0.31 -0.0
174,235 - AO356_00770 0.31 +1.2
174,235 - AO356_00770 0.31 -0.1
174,235 - AO356_00770 0.31 +0.7
174,235 - AO356_00770 0.31 +1.1
174,236 + AO356_00770 0.31 +0.2
174,236 + AO356_00770 0.31 +0.4
174,237 - AO356_00770 0.31 -0.9
174,246 + AO356_00770 0.31 +0.1
174,246 + AO356_00770 0.31 +0.5
174,247 - AO356_00770 0.31 -0.1
174,247 - AO356_00770 0.31 +0.7
174,247 - AO356_00770 0.31 +0.4
174,248 + AO356_00770 0.31 -0.3
174,248 + AO356_00770 0.31 +0.1
174,249 - AO356_00770 0.31 +0.6
174,249 - AO356_00770 0.31 +0.8
174,249 - AO356_00770 0.31 -0.2
174,249 - AO356_00770 0.31 +0.1
174,615 + AO356_00770 0.46 +0.8
174,615 + AO356_00770 0.46 -0.3
174,696 + AO356_00770 0.49 +0.2
174,697 - AO356_00770 0.49 +0.6
174,697 - AO356_00770 0.49 +0.8
174,697 - AO356_00770 0.49 -1.3
174,806 + AO356_00770 0.54 -1.0
174,831 + AO356_00770 0.55 +0.8
175,008 + AO356_00770 0.62 -0.6
175,018 - AO356_00770 0.63 +0.7
175,018 - AO356_00770 0.63 +0.4
175,018 - AO356_00770 0.63 -0.7
175,158 + AO356_00770 0.68 +1.4
175,158 + AO356_00770 0.68 +0.0
175,158 + AO356_00770 0.68 -1.2
175,158 + AO356_00770 0.68 +0.6
175,161 + AO356_00770 0.68 +0.2
175,161 + AO356_00770 0.68 +0.1
175,161 + AO356_00770 0.68 -0.3
175,213 - AO356_00770 0.70 -0.4
175,268 + AO356_00770 0.73 +0.6
175,269 - AO356_00770 0.73 +0.7
175,335 + AO356_00770 0.75 +1.7
175,335 + AO356_00770 0.75 +1.8
175,501 - AO356_00770 0.82 -0.3
175,615 - AO356_00770 0.87 +0.6
175,615 - AO356_00770 0.87 -0.1
175,615 - AO356_00770 0.87 +0.5
175,695 + +0.8
175,695 + -1.0
175,696 - +0.5
175,785 - +0.6
175,878 + +0.2
175,878 + +0.8
175,879 - -0.5
175,879 - -0.2
175,879 - -0.9
175,879 - +0.0
176,050 + +1.0
176,050 + -0.2
176,051 - +0.2
176,051 - +0.2
176,073 + AO356_00775 0.12 -1.9
176,073 + AO356_00775 0.12 -0.1
176,073 + AO356_00775 0.12 +0.7
176,073 + AO356_00775 0.12 +0.6
176,073 + AO356_00775 0.12 -1.5
176,073 + AO356_00775 0.12 -0.9
176,073 + AO356_00775 0.12 +0.4
176,073 + AO356_00775 0.12 +0.8
176,074 - AO356_00775 0.12 -0.3
176,074 - AO356_00775 0.12 +0.6
176,074 - AO356_00775 0.12 +0.2
176,074 - AO356_00775 0.12 +0.3
176,074 - AO356_00775 0.12 +0.0
176,074 - AO356_00775 0.12 -0.7
176,074 - AO356_00775 0.12 +0.1
176,129 + AO356_00775 0.17 -0.2
176,129 + AO356_00775 0.17 -0.4
176,316 + AO356_00775 0.36 -1.3
176,316 + AO356_00775 0.36 -0.6
176,316 + AO356_00775 0.36 +0.1
176,316 + AO356_00775 0.36 -0.5
176,316 + AO356_00775 0.36 +0.2
176,316 + AO356_00775 0.36 -0.3
176,316 + AO356_00775 0.36 +1.8
176,317 - AO356_00775 0.36 +0.4
176,682 + AO356_00775 0.72 +0.4
176,682 + AO356_00775 0.72 +0.7
176,683 - AO356_00775 0.72 -0.1
176,683 - AO356_00775 0.72 +0.2
176,683 - AO356_00775 0.72 -0.1
176,688 + AO356_00775 0.72 +0.2
176,688 + AO356_00775 0.72 +0.8
176,688 + AO356_00775 0.72 -1.6
176,689 - AO356_00775 0.72 +0.5
176,689 - AO356_00775 0.72 -0.5
176,689 - AO356_00775 0.72 -1.3
176,691 + AO356_00775 0.72 +0.6
176,772 + AO356_00775 0.80 +0.8
176,773 - AO356_00775 0.80 -0.9
176,781 + AO356_00775 0.81 +0.5
176,931 - +0.7

Or see this region's nucleotide sequence