Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3082

Experiment: MoYLS4 with Ceftazidime 0.9 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3079 and DvMF_3080 are separated by 67 nucleotidesDvMF_3080 and DvMF_3081 are separated by 214 nucleotidesDvMF_3081 and DvMF_3082 are separated by 228 nucleotidesDvMF_3082 and DvMF_3083 are separated by 303 nucleotides DvMF_3079: DvMF_3079 - hypothetical protein (RefSeq), at 3,887,864 to 3,889,366 _3079 DvMF_3080: DvMF_3080 - hypothetical protein (RefSeq), at 3,889,434 to 3,889,640 _3080 DvMF_3081: DvMF_3081 - hypothetical protein (RefSeq), at 3,889,855 to 3,890,037 _3081 DvMF_3082: DvMF_3082 - protein of unknown function UPF0118 (RefSeq), at 3,890,266 to 3,891,459 _3082 DvMF_3083: DvMF_3083 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 3,891,763 to 3,894,993 _3083 Position (kb) 3890 3891 3892Strain fitness (log2 ratio) -2 -1 0 1at 3889.408 kb on + strandat 3889.457 kb on + strand, within DvMF_3080at 3889.457 kb on + strand, within DvMF_3080at 3889.465 kb on - strand, within DvMF_3080at 3889.489 kb on + strand, within DvMF_3080at 3889.562 kb on - strand, within DvMF_3080at 3889.741 kb on - strandat 3889.810 kb on + strandat 3890.381 kb on - strandat 3890.393 kb on + strand, within DvMF_3082at 3890.401 kb on - strand, within DvMF_3082at 3890.401 kb on - strand, within DvMF_3082at 3890.431 kb on + strand, within DvMF_3082at 3890.493 kb on - strand, within DvMF_3082at 3890.499 kb on - strand, within DvMF_3082at 3890.519 kb on + strand, within DvMF_3082at 3890.753 kb on - strand, within DvMF_3082at 3890.769 kb on + strand, within DvMF_3082at 3890.769 kb on + strand, within DvMF_3082at 3891.039 kb on - strand, within DvMF_3082at 3891.117 kb on + strand, within DvMF_3082at 3891.672 kb on - strandat 3891.939 kb on + strandat 3892.053 kb on + strandat 3892.106 kb on + strand, within DvMF_3083at 3892.111 kb on + strand, within DvMF_3083at 3892.181 kb on - strand, within DvMF_3083

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.9 mg/ml
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3,889,408 + -0.4
3,889,457 + DvMF_3080 0.11 -0.6
3,889,457 + DvMF_3080 0.11 +0.3
3,889,465 - DvMF_3080 0.15 -0.4
3,889,489 + DvMF_3080 0.27 -0.3
3,889,562 - DvMF_3080 0.62 -0.4
3,889,741 - -0.4
3,889,810 + +0.1
3,890,381 - -0.3
3,890,393 + DvMF_3082 0.11 -1.2
3,890,401 - DvMF_3082 0.11 -0.4
3,890,401 - DvMF_3082 0.11 -1.2
3,890,431 + DvMF_3082 0.14 -0.6
3,890,493 - DvMF_3082 0.19 -0.7
3,890,499 - DvMF_3082 0.20 -0.4
3,890,519 + DvMF_3082 0.21 -0.3
3,890,753 - DvMF_3082 0.41 -0.2
3,890,769 + DvMF_3082 0.42 -0.8
3,890,769 + DvMF_3082 0.42 -0.8
3,891,039 - DvMF_3082 0.65 -1.9
3,891,117 + DvMF_3082 0.71 -0.4
3,891,672 - -0.7
3,891,939 + -0.4
3,892,053 + -0.5
3,892,106 + DvMF_3083 0.11 -0.2
3,892,111 + DvMF_3083 0.11 -0.5
3,892,181 - DvMF_3083 0.13 +0.1

Or see this region's nucleotide sequence