Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2469

Experiment: MoYLS4 with Ceftazidime 0.9 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2467 and DvMF_2468 are separated by 58 nucleotidesDvMF_2468 and DvMF_2469 overlap by 4 nucleotidesDvMF_2469 and DvMF_2470 are separated by 11 nucleotides DvMF_2467: DvMF_2467 - hypothetical protein (RefSeq), at 3,112,109 to 3,112,639 _2467 DvMF_2468: DvMF_2468 - molybdopterin-containing oxidoreductase membrane anchor subunit (RefSeq), at 3,112,698 to 3,113,495 _2468 DvMF_2469: DvMF_2469 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 3,113,492 to 3,114,058 _2469 DvMF_2470: DvMF_2470 - molybdopterin oxidoreductase (RefSeq), at 3,114,070 to 3,116,325 _2470 Position (kb) 3113 3114 3115Strain fitness (log2 ratio) -1 0 1at 3112.696 kb on + strandat 3113.082 kb on + strand, within DvMF_2468at 3113.090 kb on - strand, within DvMF_2468at 3113.350 kb on - strand, within DvMF_2468at 3113.421 kb on + strandat 3113.475 kb on + strandat 3113.730 kb on + strand, within DvMF_2469at 3113.829 kb on + strand, within DvMF_2469at 3113.859 kb on - strand, within DvMF_2469at 3113.912 kb on - strand, within DvMF_2469at 3114.271 kb on - strandat 3114.342 kb on - strand, within DvMF_2470at 3114.748 kb on + strand, within DvMF_2470at 3114.878 kb on - strand, within DvMF_2470at 3114.968 kb on + strand, within DvMF_2470at 3115.013 kb on + strand, within DvMF_2470

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.9 mg/ml
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3,112,696 + -0.1
3,113,082 + DvMF_2468 0.48 -0.8
3,113,090 - DvMF_2468 0.49 +1.0
3,113,350 - DvMF_2468 0.82 +0.4
3,113,421 + -1.0
3,113,475 + -0.5
3,113,730 + DvMF_2469 0.42 -1.0
3,113,829 + DvMF_2469 0.59 -0.0
3,113,859 - DvMF_2469 0.65 -0.5
3,113,912 - DvMF_2469 0.74 -0.4
3,114,271 - -0.1
3,114,342 - DvMF_2470 0.12 -0.7
3,114,748 + DvMF_2470 0.30 -0.6
3,114,878 - DvMF_2470 0.36 -0.7
3,114,968 + DvMF_2470 0.40 -1.3
3,115,013 + DvMF_2470 0.42 -0.5

Or see this region's nucleotide sequence