Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2400

Experiment: MoYLS4 with Ceftazidime 0.9 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2399 and DvMF_2400 overlap by 4 nucleotidesDvMF_2400 and DvMF_2401 overlap by 4 nucleotides DvMF_2399: DvMF_2399 - ABC transporter related (RefSeq), at 3,031,953 to 3,032,975 _2399 DvMF_2400: DvMF_2400 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,032,972 to 3,034,093 _2400 DvMF_2401: DvMF_2401 - nickel transporter permease NikB (RefSeq), at 3,034,090 to 3,035,031 _2401 Position (kb) 3032 3033 3034 3035Strain fitness (log2 ratio) -2 -1 0 1at 3032.117 kb on + strand, within DvMF_2399at 3032.182 kb on - strand, within DvMF_2399at 3032.231 kb on - strand, within DvMF_2399at 3032.621 kb on + strand, within DvMF_2399at 3032.625 kb on - strand, within DvMF_2399at 3032.948 kb on + strandat 3033.155 kb on + strand, within DvMF_2400at 3033.340 kb on + strand, within DvMF_2400at 3033.525 kb on - strand, within DvMF_2400at 3033.525 kb on - strand, within DvMF_2400at 3033.597 kb on - strand, within DvMF_2400at 3033.794 kb on + strand, within DvMF_2400at 3033.832 kb on - strand, within DvMF_2400at 3034.308 kb on + strand, within DvMF_2401at 3034.495 kb on + strand, within DvMF_2401

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.9 mg/ml
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3,032,117 + DvMF_2399 0.16 -1.3
3,032,182 - DvMF_2399 0.22 -0.7
3,032,231 - DvMF_2399 0.27 -1.3
3,032,621 + DvMF_2399 0.65 -1.5
3,032,625 - DvMF_2399 0.66 -0.7
3,032,948 + -0.5
3,033,155 + DvMF_2400 0.16 -0.8
3,033,340 + DvMF_2400 0.33 +0.7
3,033,525 - DvMF_2400 0.49 -1.2
3,033,525 - DvMF_2400 0.49 -0.4
3,033,597 - DvMF_2400 0.56 -1.0
3,033,794 + DvMF_2400 0.73 -1.6
3,033,832 - DvMF_2400 0.77 -1.0
3,034,308 + DvMF_2401 0.23 -1.4
3,034,495 + DvMF_2401 0.43 -1.8

Or see this region's nucleotide sequence