Experiment: MoYLS4 with Ceftazidime 0.9 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0905 and DvMF_0906 are separated by 276 nucleotides DvMF_0906 and DvMF_0907 are separated by 223 nucleotides DvMF_0907 and DvMF_0908 are separated by 544 nucleotides
DvMF_0905: DvMF_0905 - hypothetical protein (RefSeq), at 1,089,115 to 1,089,660
_0905
DvMF_0906: DvMF_0906 - UspA domain protein (RefSeq), at 1,089,937 to 1,090,380
_0906
DvMF_0907: DvMF_0907 - NADH dehydrogenase (ubiquinone) (RefSeq), at 1,090,604 to 1,091,962
_0907
DvMF_0908: DvMF_0908 - histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) , at 1,092,507 to 1,093,670
_0908
Position (kb)
1090
1091
1092 Strain fitness (log2 ratio)
-1
0
1 at 1090.299 kb on - strand, within DvMF_0906 at 1090.299 kb on - strand, within DvMF_0906 at 1090.397 kb on + strand at 1090.931 kb on - strand, within DvMF_0907 at 1090.931 kb on - strand, within DvMF_0907 at 1091.090 kb on - strand, within DvMF_0907 at 1091.236 kb on + strand, within DvMF_0907 at 1091.437 kb on + strand, within DvMF_0907 at 1091.451 kb on + strand, within DvMF_0907 at 1091.520 kb on - strand, within DvMF_0907 at 1091.662 kb on - strand, within DvMF_0907 at 1091.729 kb on - strand, within DvMF_0907 at 1092.095 kb on - strand at 1092.180 kb on + strand at 1092.285 kb on + strand at 1092.295 kb on + strand at 1092.303 kb on + strand at 1092.303 kb on - strand at 1092.563 kb on + strand at 1092.568 kb on + strand at 1092.571 kb on - strand at 1092.871 kb on - strand, within DvMF_0908 at 1092.874 kb on + strand, within DvMF_0908 at 1092.884 kb on + strand, within DvMF_0908
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.9 mg/ml remove 1,090,299 - DvMF_0906 0.82 +0.9 1,090,299 - DvMF_0906 0.82 +0.1 1,090,397 + -0.4 1,090,931 - DvMF_0907 0.24 +0.1 1,090,931 - DvMF_0907 0.24 -1.2 1,091,090 - DvMF_0907 0.36 -0.4 1,091,236 + DvMF_0907 0.47 -0.2 1,091,437 + DvMF_0907 0.61 -1.4 1,091,451 + DvMF_0907 0.62 -0.7 1,091,520 - DvMF_0907 0.67 -0.7 1,091,662 - DvMF_0907 0.78 -0.8 1,091,729 - DvMF_0907 0.83 -0.2 1,092,095 - -0.5 1,092,180 + -0.1 1,092,285 + -0.6 1,092,295 + -0.3 1,092,303 + -0.9 1,092,303 - -0.9 1,092,563 + -1.5 1,092,568 + -0.8 1,092,571 - -0.8 1,092,871 - DvMF_0908 0.31 -1.5 1,092,874 + DvMF_0908 0.32 -0.5 1,092,884 + DvMF_0908 0.32 -1.0
Or see this region's nucleotide sequence