Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0845

Experiment: MoYLS4 with Ceftazidime 0.9 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0844 and DvMF_0845 are separated by 111 nucleotidesDvMF_0845 and DvMF_0846 are separated by 13 nucleotides DvMF_0844: DvMF_0844 - Sua5/YciO/YrdC/YwlC family protein (RefSeq), at 1,020,483 to 1,021,139 _0844 DvMF_0845: DvMF_0845 - protein of unknown function DUF163 (RefSeq), at 1,021,251 to 1,021,718 _0845 DvMF_0846: DvMF_0846 - hypothetical protein (RefSeq), at 1,021,732 to 1,024,080 _0846 Position (kb) 1021 1022Strain fitness (log2 ratio) -1 0 1at 1020.256 kb on - strandat 1021.210 kb on + strandat 1021.481 kb on + strand, within DvMF_0845at 1021.489 kb on - strand, within DvMF_0845at 1021.676 kb on - strandat 1022.071 kb on - strand, within DvMF_0846

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.9 mg/ml
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1,020,256 - -0.3
1,021,210 + -0.3
1,021,481 + DvMF_0845 0.49 -0.3
1,021,489 - DvMF_0845 0.51 -0.5
1,021,676 - -0.3
1,022,071 - DvMF_0846 0.14 +0.5

Or see this region's nucleotide sequence