Experiment: MoYLS4 with Ceftazidime 0.9 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0645 and DvMF_0646 are separated by 744 nucleotides DvMF_0646 and DvMF_0647 are separated by 53 nucleotides DvMF_0647 and DvMF_0648 are separated by 75 nucleotides
DvMF_0645: DvMF_0645 - formate dehydrogenase accessory protein (RefSeq), at 774,920 to 775,933
_0645
DvMF_0646: DvMF_0646 - formate dehydrogenase, alpha subunit (RefSeq), at 776,678 to 779,719
_0646
DvMF_0647: DvMF_0647 - formate dehydrogenase beta subunit (RefSeq), at 779,773 to 780,432
_0647
DvMF_0648: DvMF_0648 - formate dehydrogenase accessory protein (RefSeq), at 780,508 to 781,473
_0648
Position (kb) 776
777
778
779
780 Strain fitness (log2 ratio) -2
-1
0
1 at 775.680 kb on + strand, within DvMF_0645 at 775.680 kb on + strand, within DvMF_0645 at 775.868 kb on - strand at 776.504 kb on + strand at 776.656 kb on + strand at 776.707 kb on + strand at 776.955 kb on - strand at 776.980 kb on + strand at 777.029 kb on + strand, within DvMF_0646 at 777.116 kb on + strand, within DvMF_0646 at 777.118 kb on - strand, within DvMF_0646 at 777.596 kb on + strand, within DvMF_0646 at 777.648 kb on + strand, within DvMF_0646 at 777.656 kb on - strand, within DvMF_0646 at 777.883 kb on + strand, within DvMF_0646 at 778.011 kb on + strand, within DvMF_0646 at 778.028 kb on + strand, within DvMF_0646 at 778.111 kb on - strand, within DvMF_0646 at 778.395 kb on - strand, within DvMF_0646 at 778.668 kb on - strand, within DvMF_0646 at 778.754 kb on - strand, within DvMF_0646 at 778.915 kb on + strand, within DvMF_0646 at 778.941 kb on + strand, within DvMF_0646 at 778.994 kb on + strand, within DvMF_0646 at 779.011 kb on + strand, within DvMF_0646 at 779.399 kb on + strand, within DvMF_0646 at 779.409 kb on + strand, within DvMF_0646 at 779.521 kb on + strand at 779.564 kb on + strand at 779.745 kb on - strand at 779.753 kb on - strand at 780.045 kb on - strand, within DvMF_0647 at 780.168 kb on + strand, within DvMF_0647 at 780.168 kb on + strand, within DvMF_0647 at 780.176 kb on - strand, within DvMF_0647 at 780.707 kb on - strand, within DvMF_0648
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.9 mg/ml remove 775,680 + DvMF_0645 0.75 -0.8 775,680 + DvMF_0645 0.75 -1.0 775,868 - -0.2 776,504 + -0.5 776,656 + -1.6 776,707 + -0.9 776,955 - -0.2 776,980 + +1.4 777,029 + DvMF_0646 0.12 -0.1 777,116 + DvMF_0646 0.14 -1.3 777,118 - DvMF_0646 0.14 -0.6 777,596 + DvMF_0646 0.30 -0.4 777,648 + DvMF_0646 0.32 -1.3 777,656 - DvMF_0646 0.32 -1.2 777,883 + DvMF_0646 0.40 -0.1 778,011 + DvMF_0646 0.44 -0.1 778,028 + DvMF_0646 0.44 -2.0 778,111 - DvMF_0646 0.47 -0.4 778,395 - DvMF_0646 0.56 -0.6 778,668 - DvMF_0646 0.65 -0.3 778,754 - DvMF_0646 0.68 -0.0 778,915 + DvMF_0646 0.74 -1.3 778,941 + DvMF_0646 0.74 +0.4 778,994 + DvMF_0646 0.76 -1.6 779,011 + DvMF_0646 0.77 -1.0 779,399 + DvMF_0646 0.89 -1.1 779,409 + DvMF_0646 0.90 -0.4 779,521 + -0.5 779,564 + -0.6 779,745 - -0.1 779,753 - +0.8 780,045 - DvMF_0647 0.41 -0.6 780,168 + DvMF_0647 0.60 +0.6 780,168 + DvMF_0647 0.60 -0.4 780,176 - DvMF_0647 0.61 -1.3 780,707 - DvMF_0648 0.21 -0.8
Or see this region's nucleotide sequence