Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0721 and Shew_0722 are separated by 11 nucleotides Shew_0722 and Shew_0723 are separated by 64 nucleotides Shew_0723 and Shew_0724 are separated by 11 nucleotides
Shew_0721: Shew_0721 - RND family efflux transporter MFP subunit (RefSeq), at 821,137 to 822,399
_0721
Shew_0722: Shew_0722 - hypothetical protein (RefSeq), at 822,411 to 822,647
_0722
Shew_0723: Shew_0723 - ABC transporter-related protein (RefSeq), at 822,712 to 823,434
_0723
Shew_0724: Shew_0724 - hypothetical protein (RefSeq), at 823,446 to 824,756
_0724
Position (kb) 822
823
824 Strain fitness (log2 ratio) -1
0
1 at 822.237 kb on + strand, within Shew_0721 at 822.245 kb on - strand, within Shew_0721 at 822.305 kb on + strand at 822.305 kb on + strand at 822.305 kb on + strand at 822.313 kb on - strand at 822.499 kb on - strand, within Shew_0722 at 822.686 kb on - strand at 822.925 kb on - strand, within Shew_0723 at 823.038 kb on - strand, within Shew_0723 at 823.071 kb on - strand, within Shew_0723 at 823.378 kb on - strand at 823.380 kb on + strand at 823.380 kb on + strand at 823.380 kb on + strand at 823.475 kb on + strand at 823.557 kb on - strand at 823.618 kb on - strand, within Shew_0724 at 823.773 kb on - strand, within Shew_0724 at 823.800 kb on - strand, within Shew_0724 at 823.800 kb on - strand, within Shew_0724 at 824.058 kb on + strand, within Shew_0724
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 822,237 + Shew_0721 0.87 +0.1 822,245 - Shew_0721 0.88 +0.1 822,305 + -0.2 822,305 + -0.3 822,305 + -0.1 822,313 - -0.2 822,499 - Shew_0722 0.37 +0.8 822,686 - -0.1 822,925 - Shew_0723 0.29 +0.3 823,038 - Shew_0723 0.45 -0.9 823,071 - Shew_0723 0.50 -0.7 823,378 - +0.1 823,380 + +0.3 823,380 + +0.1 823,380 + -0.1 823,475 + +0.5 823,557 - +0.1 823,618 - Shew_0724 0.13 +0.2 823,773 - Shew_0724 0.25 -0.2 823,800 - Shew_0724 0.27 -0.5 823,800 - Shew_0724 0.27 +0.3 824,058 + Shew_0724 0.47 -0.4
Or see this region's nucleotide sequence