Experiment: m.b. Cobalt chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1288 and Dshi_1289 are separated by 47 nucleotides Dshi_1289 and Dshi_1290 are separated by 91 nucleotides Dshi_1290 and Dshi_1291 are separated by 232 nucleotides Dshi_1291 and Dshi_1292 overlap by 4 nucleotides
Dshi_1288: Dshi_1288 - amidohydrolase (RefSeq), at 1,341,315 to 1,342,481
_1288
Dshi_1289: Dshi_1289 - glutamine amidotransferase class-I (RefSeq), at 1,342,529 to 1,343,269
_1289
Dshi_1290: Dshi_1290 - molybdenum cofactor biosynthesis protein A (RefSeq), at 1,343,361 to 1,344,371
_1290
Dshi_1291: Dshi_1291 - DNA alkylation repair enzyme (RefSeq), at 1,344,604 to 1,345,305
_1291
Dshi_1292: Dshi_1292 - pyridoxamine 5'-phosphate oxidase-related FMN-binding (RefSeq), at 1,345,302 to 1,345,850
_1292
Position (kb)
1343
1344
1345 Strain fitness (log2 ratio)
-2
-1
0
1 at 1342.443 kb on + strand at 1343.019 kb on - strand, within Dshi_1289 at 1343.019 kb on - strand, within Dshi_1289 at 1343.126 kb on + strand, within Dshi_1289 at 1343.263 kb on + strand at 1343.568 kb on + strand, within Dshi_1290 at 1344.216 kb on + strand, within Dshi_1290 at 1344.276 kb on + strand at 1344.359 kb on - strand at 1344.424 kb on - strand at 1344.536 kb on + strand at 1344.851 kb on - strand, within Dshi_1291 at 1344.854 kb on - strand, within Dshi_1291 at 1344.887 kb on + strand, within Dshi_1291 at 1344.895 kb on - strand, within Dshi_1291 at 1344.915 kb on - strand, within Dshi_1291 at 1344.981 kb on - strand, within Dshi_1291
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM remove 1,342,443 + +0.0 1,343,019 - Dshi_1289 0.66 -0.6 1,343,019 - Dshi_1289 0.66 -0.0 1,343,126 + Dshi_1289 0.81 +1.3 1,343,263 + +0.2 1,343,568 + Dshi_1290 0.20 -2.3 1,344,216 + Dshi_1290 0.85 -0.8 1,344,276 + +0.0 1,344,359 - +0.4 1,344,424 - -2.2 1,344,536 + +0.0 1,344,851 - Dshi_1291 0.35 +0.2 1,344,854 - Dshi_1291 0.36 +0.7 1,344,887 + Dshi_1291 0.40 -0.3 1,344,895 - Dshi_1291 0.41 +0.0 1,344,915 - Dshi_1291 0.44 -0.5 1,344,981 - Dshi_1291 0.54 -1.3
Or see this region's nucleotide sequence