Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5078

Experiment: KB with capsaicin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.125 mg/ml
6,020,892	+		Psyr_5077	0.49	+0.5
6,020,892	+		Psyr_5077	0.49	-0.9
6,020,892	+		Psyr_5077	0.49	+0.8
6,020,892	+		Psyr_5077	0.49	+2.6
6,020,892	+		Psyr_5077	0.49	+0.1
6,020,892	+		Psyr_5077	0.49	+0.6
6,020,892	+		Psyr_5077	0.49	-0.5
6,020,892	+		Psyr_5077	0.49	+0.4
6,020,892	+		Psyr_5077	0.49	-0.2
6,020,892	+		Psyr_5077	0.49	-0.9
6,020,893	-		Psyr_5077	0.49	-1.3
6,020,893	-		Psyr_5077	0.49	-0.0
6,020,893	-		Psyr_5077	0.49	+1.4
6,021,189	+		Psyr_5077	0.73	-1.2
6,021,190	-		Psyr_5077	0.73	+0.3
6,021,190	-		Psyr_5077	0.73	-0.2
6,021,190	-		Psyr_5077	0.73	+0.2
6,021,239	-		Psyr_5077	0.77	+0.3
6,021,261	+		Psyr_5077	0.79	+0.9
6,021,364	+		Psyr_5077	0.87	-0.5
6,021,364	+		Psyr_5077	0.87	-0.3
6,021,364	+		Psyr_5077	0.87	+0.1
6,021,365	-		Psyr_5077	0.87	-0.7
6,021,365	-		Psyr_5077	0.87	+0.6
6,021,365	-		Psyr_5077	0.87	+0.8
6,021,365	-		Psyr_5077	0.87	-0.7
6,021,491	+				-1.3
6,021,491	+				-0.7
6,021,492	-				-1.0
6,021,580	+				-0.9
6,021,589	-				-0.6
6,021,589	-				+0.1
6,021,631	+				-0.2
6,021,631	+				+0.9
6,021,631	+				-0.4
6,021,632	-				+0.8
6,021,632	-				-0.3
6,021,632	-				-0.3
6,021,632	-				-1.1
6,021,702	+				-0.7
6,021,702	+				+0.4
6,021,703	-				+1.3
6,021,724	+				+0.6
6,021,725	-				-1.4
6,022,141	+		Psyr_5078	0.81	-1.0
6,022,141	+		Psyr_5078	0.81	-1.0
6,022,141	+		Psyr_5078	0.81	+0.3
6,022,141	+		Psyr_5078	0.81	-0.8
6,022,142	-		Psyr_5078	0.81	-2.2
6,022,142	-		Psyr_5078	0.81	-1.1
6,022,302	+				+1.8
6,022,309	+				-1.2
6,022,346	-				-0.7
6,022,349	+				-0.7
6,022,416	+				-0.1
6,022,428	+				-0.8
6,022,429	-				+0.8
6,022,441	-				+0.1
6,022,462	+				+2.9
6,022,462	+				+0.7
6,022,555	-		Psyr_5079	0.10	-0.1
6,022,572	+		Psyr_5079	0.11	+0.1
6,022,573	-		Psyr_5079	0.11	+0.1
6,022,573	-		Psyr_5079	0.11	-1.0
6,022,605	+		Psyr_5079	0.14	-0.3
6,022,605	+		Psyr_5079	0.14	+0.3
6,022,606	-		Psyr_5079	0.14	-0.2
6,022,606	-		Psyr_5079	0.14	-0.5
6,022,606	-		Psyr_5079	0.14	-0.4
6,022,606	-		Psyr_5079	0.14	+0.1
6,022,606	-		Psyr_5079	0.14	+0.3
6,022,714	-		Psyr_5079	0.21	-1.1
6,022,942	+		Psyr_5079	0.37	-0.3
6,022,942	+		Psyr_5079	0.37	-1.3
6,022,942	+		Psyr_5079	0.37	+0.6
6,022,943	-		Psyr_5079	0.37	-0.5
6,022,943	-		Psyr_5079	0.37	+1.0
6,022,947	+		Psyr_5079	0.37	-0.2
6,022,947	+		Psyr_5079	0.37	-0.3
6,022,947	+		Psyr_5079	0.37	+0.3
6,022,983	+		Psyr_5079	0.40	+0.9
6,022,983	+		Psyr_5079	0.40	+0.8
6,022,983	+		Psyr_5079	0.40	+1.6
6,022,983	+		Psyr_5079	0.40	+0.6
6,022,983	+		Psyr_5079	0.40	-0.5
6,022,983	+		Psyr_5079	0.40	-0.5
6,022,983	+		Psyr_5079	0.40	+0.6
6,022,983	+		Psyr_5079	0.40	-0.1
6,022,983	+		Psyr_5079	0.40	+0.9
6,022,983	+		Psyr_5079	0.40	+0.3
6,022,984	-		Psyr_5079	0.40	+0.4
6,022,984	-		Psyr_5079	0.40	+0.5
6,022,984	-		Psyr_5079	0.40	-1.2
6,022,984	-		Psyr_5079	0.40	-1.4
6,022,984	-		Psyr_5079	0.40	-0.0
6,022,984	-		Psyr_5079	0.40	+1.4
6,022,996	+		Psyr_5079	0.41	-0.3
6,022,997	-		Psyr_5079	0.41	+1.0
6,023,017	+		Psyr_5079	0.42	+0.2
6,023,017	+		Psyr_5079	0.42	+0.3
6,023,018	-		Psyr_5079	0.42	-1.3
6,023,018	-		Psyr_5079	0.42	-0.1
6,023,018	-		Psyr_5079	0.42	+1.3
6,023,112	+		Psyr_5079	0.49	+0.9
6,023,112	+		Psyr_5079	0.49	-0.4
6,023,112	+		Psyr_5079	0.49	-0.0
6,023,112	+		Psyr_5079	0.49	+1.6
6,023,113	-		Psyr_5079	0.49	-0.9
6,023,113	-		Psyr_5079	0.49	+0.0
6,023,113	-		Psyr_5079	0.49	+0.0
6,023,113	-		Psyr_5079	0.49	-0.9
6,023,113	-		Psyr_5079	0.49	+0.0
6,023,113	-		Psyr_5079	0.49	+0.3
6,023,114	+		Psyr_5079	0.49	-0.0
6,023,114	+		Psyr_5079	0.49	+3.3
6,023,114	+		Psyr_5079	0.49	+3.3
6,023,114	+		Psyr_5079	0.49	-0.7
6,023,114	+		Psyr_5079	0.49	-0.6
6,023,114	+		Psyr_5079	0.49	+0.7
6,023,115	-		Psyr_5079	0.49	+0.2
6,023,115	-		Psyr_5079	0.49	-0.2
6,023,115	-		Psyr_5079	0.49	+0.6
6,023,115	-		Psyr_5079	0.49	-0.5
6,023,115	-		Psyr_5079	0.49	+0.6
6,023,115	-		Psyr_5079	0.49	+1.0
6,023,116	+		Psyr_5079	0.49	-1.9
6,023,116	+		Psyr_5079	0.49	+1.4
6,023,116	+		Psyr_5079	0.49	+1.5
6,023,116	+		Psyr_5079	0.49	-2.3
6,023,116	+		Psyr_5079	0.49	-0.4
6,023,116	+		Psyr_5079	0.49	+0.5
6,023,116	+		Psyr_5079	0.49	+0.0
6,023,117	-		Psyr_5079	0.49	-2.5
6,023,117	-		Psyr_5079	0.49	+0.5
6,023,117	-		Psyr_5079	0.49	+0.3
6,023,117	-		Psyr_5079	0.49	-0.3
6,023,117	-		Psyr_5079	0.49	+0.3
6,023,117	-		Psyr_5079	0.49	-2.0
6,023,117	-		Psyr_5079	0.49	-0.1
6,023,117	-		Psyr_5079	0.49	+0.0
6,023,117	-		Psyr_5079	0.49	+0.9
6,023,117	-		Psyr_5079	0.49	-1.5
6,023,126	+		Psyr_5079	0.50	+0.8
6,023,126	+		Psyr_5079	0.50	-0.3
6,023,127	-		Psyr_5079	0.50	-0.1
6,023,127	-		Psyr_5079	0.50	-0.0
6,023,142	+		Psyr_5079	0.51	+1.1
6,023,142	+		Psyr_5079	0.51	+0.3
6,023,142	+		Psyr_5079	0.51	+0.1
6,023,142	+		Psyr_5079	0.51	+0.3
6,023,142	+		Psyr_5079	0.51	+0.6
6,023,142	+		Psyr_5079	0.51	-0.0
6,023,142	+		Psyr_5079	0.51	-1.1
6,023,142	+		Psyr_5079	0.51	-2.0
6,023,142	+		Psyr_5079	0.51	-0.1
6,023,142	+		Psyr_5079	0.51	-0.6
6,023,142	+		Psyr_5079	0.51	-1.2
6,023,142	+		Psyr_5079	0.51	+0.3
6,023,142	+		Psyr_5079	0.51	-0.5
6,023,142	+		Psyr_5079	0.51	+1.3
6,023,142	+		Psyr_5079	0.51	-0.5
6,023,142	+		Psyr_5079	0.51	-0.3
6,023,142	+		Psyr_5079	0.51	-1.4
6,023,143	-		Psyr_5079	0.51	-0.0
6,023,143	-		Psyr_5079	0.51	+0.3
6,023,143	-		Psyr_5079	0.51	+0.6
6,023,143	-		Psyr_5079	0.51	+0.5
6,023,143	-		Psyr_5079	0.51	-0.5
6,023,143	-		Psyr_5079	0.51	-1.8
6,023,143	-		Psyr_5079	0.51	+0.6
6,023,143	-		Psyr_5079	0.51	-2.2
6,023,143	-		Psyr_5079	0.51	-0.5
6,023,143	-		Psyr_5079	0.51	-1.1
6,023,143	-		Psyr_5079	0.51	+1.5
6,023,143	-		Psyr_5079	0.51	+1.1
6,023,143	-		Psyr_5079	0.51	-0.7
6,023,143	-		Psyr_5079	0.51	-0.9
6,023,143	-		Psyr_5079	0.51	-0.5
6,023,143	-		Psyr_5079	0.51	-0.4
6,023,143	-		Psyr_5079	0.51	-0.5
6,023,143	-		Psyr_5079	0.51	-2.4
6,023,143	-		Psyr_5079	0.51	-1.0
6,023,143	-		Psyr_5079	0.51	+0.1
6,023,143	-		Psyr_5079	0.51	-0.0
6,023,143	-		Psyr_5079	0.51	+1.3
6,023,143	-		Psyr_5079	0.51	+0.5