Experiment: KB with capsaicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_5015 and Psyr_5016 are separated by 419 nucleotides Psyr_5016 and Psyr_5017 are separated by 10 nucleotides Psyr_5017 and Psyr_5018 overlap by 4 nucleotides
Psyr_5015: Psyr_5015 - transcriptional regulator, LysR family, at 5,956,273 to 5,957,259
_5015
Psyr_5016: Psyr_5016 - Alanine dehydrogenase/PNT, C-terminal:Alanine dehydrogenase/PNT, N-terminal, at 5,957,679 to 5,958,800
_5016
Psyr_5017: Psyr_5017 - NAD(P) transhydrogenase subunit alpha, at 5,958,811 to 5,959,134
_5017
Psyr_5018: Psyr_5018 - NAD(P) transhydrogenase, beta subunit, at 5,959,131 to 5,960,585
_5018
Position (kb) 5957
5958
5959 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5956.780 kb on + strand, within Psyr_5015 at 5956.780 kb on + strand, within Psyr_5015 at 5956.781 kb on - strand, within Psyr_5015 at 5956.781 kb on - strand, within Psyr_5015 at 5956.781 kb on - strand, within Psyr_5015 at 5956.781 kb on - strand, within Psyr_5015 at 5956.976 kb on + strand, within Psyr_5015 at 5957.002 kb on + strand, within Psyr_5015 at 5957.002 kb on + strand, within Psyr_5015 at 5957.136 kb on + strand, within Psyr_5015 at 5957.142 kb on + strand, within Psyr_5015 at 5957.149 kb on + strand, within Psyr_5015 at 5957.149 kb on + strand, within Psyr_5015 at 5957.149 kb on + strand, within Psyr_5015 at 5957.149 kb on + strand, within Psyr_5015 at 5957.150 kb on - strand, within Psyr_5015 at 5957.150 kb on - strand, within Psyr_5015 at 5957.150 kb on - strand, within Psyr_5015 at 5957.150 kb on - strand, within Psyr_5015 at 5957.150 kb on - strand, within Psyr_5015 at 5957.152 kb on + strand, within Psyr_5015 at 5957.152 kb on + strand, within Psyr_5015 at 5957.152 kb on + strand, within Psyr_5015 at 5957.152 kb on + strand, within Psyr_5015 at 5957.152 kb on + strand, within Psyr_5015 at 5957.152 kb on + strand, within Psyr_5015 at 5957.152 kb on + strand, within Psyr_5015 at 5957.153 kb on - strand, within Psyr_5015 at 5957.273 kb on + strand at 5957.300 kb on + strand at 5957.301 kb on - strand at 5957.301 kb on - strand at 5957.301 kb on - strand at 5957.301 kb on - strand at 5957.301 kb on - strand at 5957.302 kb on + strand at 5957.303 kb on - strand at 5957.309 kb on - strand at 5957.309 kb on - strand at 5957.362 kb on - strand at 5957.365 kb on + strand at 5957.366 kb on - strand at 5957.421 kb on - strand at 5957.421 kb on - strand at 5957.443 kb on + strand at 5957.464 kb on + strand at 5957.493 kb on + strand at 5957.494 kb on - strand at 5957.494 kb on - strand at 5957.504 kb on - strand at 5957.513 kb on - strand at 5957.522 kb on - strand at 5957.541 kb on + strand at 5957.542 kb on - strand at 5957.629 kb on - strand at 5957.641 kb on + strand at 5957.641 kb on + strand at 5957.641 kb on + strand at 5957.642 kb on - strand at 5957.642 kb on - strand at 5957.642 kb on - strand at 5957.645 kb on + strand at 5957.645 kb on + strand at 5957.645 kb on + strand at 5957.645 kb on + strand at 5957.645 kb on + strand at 5957.645 kb on + strand at 5957.645 kb on + strand at 5957.646 kb on - strand at 5957.646 kb on - strand at 5957.646 kb on - strand at 5957.646 kb on - strand at 5957.646 kb on - strand at 5957.646 kb on - strand at 5957.646 kb on - strand at 5957.646 kb on - strand at 5957.646 kb on - strand at 5957.646 kb on - strand at 5957.646 kb on - strand at 5957.655 kb on - strand at 5957.726 kb on - strand at 5957.826 kb on + strand, within Psyr_5016 at 5957.827 kb on - strand, within Psyr_5016 at 5957.827 kb on - strand, within Psyr_5016 at 5957.868 kb on + strand, within Psyr_5016 at 5957.868 kb on + strand, within Psyr_5016 at 5957.868 kb on + strand, within Psyr_5016 at 5957.868 kb on + strand, within Psyr_5016 at 5957.868 kb on + strand, within Psyr_5016 at 5957.868 kb on + strand, within Psyr_5016 at 5957.868 kb on + strand, within Psyr_5016 at 5957.868 kb on + strand, within Psyr_5016 at 5957.868 kb on + strand, within Psyr_5016 at 5957.869 kb on - strand, within Psyr_5016 at 5957.869 kb on - strand, within Psyr_5016 at 5957.869 kb on - strand, within Psyr_5016 at 5957.869 kb on - strand, within Psyr_5016 at 5958.090 kb on + strand, within Psyr_5016 at 5958.091 kb on - strand, within Psyr_5016 at 5958.247 kb on + strand, within Psyr_5016 at 5958.247 kb on + strand, within Psyr_5016 at 5958.247 kb on + strand, within Psyr_5016 at 5958.247 kb on + strand, within Psyr_5016 at 5958.248 kb on - strand, within Psyr_5016 at 5958.248 kb on - strand, within Psyr_5016 at 5958.322 kb on - strand, within Psyr_5016 at 5958.666 kb on + strand, within Psyr_5016 at 5958.667 kb on - strand, within Psyr_5016 at 5958.838 kb on + strand at 5958.839 kb on - strand at 5958.839 kb on - strand at 5958.839 kb on - strand at 5958.839 kb on - strand at 5958.868 kb on + strand, within Psyr_5017 at 5958.868 kb on + strand, within Psyr_5017 at 5958.868 kb on + strand, within Psyr_5017 at 5958.868 kb on + strand, within Psyr_5017 at 5958.868 kb on + strand, within Psyr_5017 at 5958.868 kb on + strand, within Psyr_5017 at 5958.869 kb on - strand, within Psyr_5017 at 5958.869 kb on - strand, within Psyr_5017 at 5958.869 kb on - strand, within Psyr_5017 at 5958.869 kb on - strand, within Psyr_5017 at 5958.877 kb on + strand, within Psyr_5017 at 5959.149 kb on - strand at 5959.158 kb on + strand at 5959.158 kb on + strand at 5959.158 kb on + strand at 5959.158 kb on + strand at 5959.159 kb on - strand at 5959.159 kb on - strand at 5959.159 kb on - strand at 5959.338 kb on + strand, within Psyr_5018 at 5959.338 kb on + strand, within Psyr_5018 at 5959.339 kb on - strand, within Psyr_5018 at 5959.339 kb on - strand, within Psyr_5018 at 5959.339 kb on - strand, within Psyr_5018 at 5959.469 kb on + strand, within Psyr_5018 at 5959.469 kb on + strand, within Psyr_5018 at 5959.472 kb on - strand, within Psyr_5018 at 5959.472 kb on - strand, within Psyr_5018 at 5959.472 kb on - strand, within Psyr_5018 at 5959.472 kb on - strand, within Psyr_5018 at 5959.472 kb on - strand, within Psyr_5018 at 5959.472 kb on - strand, within Psyr_5018 at 5959.580 kb on + strand, within Psyr_5018 at 5959.580 kb on + strand, within Psyr_5018 at 5959.580 kb on + strand, within Psyr_5018
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml remove 5,956,780 + Psyr_5015 0.51 +0.7 5,956,780 + Psyr_5015 0.51 -1.3 5,956,781 - Psyr_5015 0.51 -0.2 5,956,781 - Psyr_5015 0.51 +0.8 5,956,781 - Psyr_5015 0.51 +0.9 5,956,781 - Psyr_5015 0.51 +0.9 5,956,976 + Psyr_5015 0.71 +0.2 5,957,002 + Psyr_5015 0.74 -0.3 5,957,002 + Psyr_5015 0.74 -0.1 5,957,136 + Psyr_5015 0.87 -0.3 5,957,142 + Psyr_5015 0.88 +1.9 5,957,149 + Psyr_5015 0.89 -1.0 5,957,149 + Psyr_5015 0.89 +0.4 5,957,149 + Psyr_5015 0.89 -0.3 5,957,149 + Psyr_5015 0.89 +0.1 5,957,150 - Psyr_5015 0.89 +0.6 5,957,150 - Psyr_5015 0.89 +0.4 5,957,150 - Psyr_5015 0.89 +1.6 5,957,150 - Psyr_5015 0.89 +0.3 5,957,150 - Psyr_5015 0.89 -0.0 5,957,152 + Psyr_5015 0.89 -0.2 5,957,152 + Psyr_5015 0.89 -0.2 5,957,152 + Psyr_5015 0.89 -1.3 5,957,152 + Psyr_5015 0.89 +0.7 5,957,152 + Psyr_5015 0.89 +0.6 5,957,152 + Psyr_5015 0.89 -0.1 5,957,152 + Psyr_5015 0.89 +0.1 5,957,153 - Psyr_5015 0.89 -0.1 5,957,273 + -0.8 5,957,300 + +0.3 5,957,301 - +0.7 5,957,301 - +1.8 5,957,301 - +0.3 5,957,301 - -0.1 5,957,301 - -0.3 5,957,302 + +1.3 5,957,303 - -0.7 5,957,309 - -0.2 5,957,309 - -0.8 5,957,362 - -0.6 5,957,365 + +0.9 5,957,366 - +0.5 5,957,421 - +1.1 5,957,421 - -0.3 5,957,443 + -0.3 5,957,464 + -1.5 5,957,493 + +0.6 5,957,494 - -0.7 5,957,494 - -1.0 5,957,504 - -0.7 5,957,513 - -1.3 5,957,522 - +0.3 5,957,541 + +0.2 5,957,542 - -0.7 5,957,629 - +0.5 5,957,641 + +0.6 5,957,641 + -1.3 5,957,641 + +0.7 5,957,642 - -1.2 5,957,642 - -0.1 5,957,642 - +0.7 5,957,645 + -0.4 5,957,645 + -0.9 5,957,645 + +0.5 5,957,645 + -1.2 5,957,645 + +1.2 5,957,645 + -0.2 5,957,645 + -1.4 5,957,646 - +0.9 5,957,646 - +1.7 5,957,646 - -0.5 5,957,646 - +0.3 5,957,646 - -0.5 5,957,646 - +0.1 5,957,646 - +0.2 5,957,646 - +0.9 5,957,646 - -2.4 5,957,646 - -0.2 5,957,646 - +0.0 5,957,655 - +1.7 5,957,726 - +0.3 5,957,826 + Psyr_5016 0.13 -1.1 5,957,827 - Psyr_5016 0.13 +1.0 5,957,827 - Psyr_5016 0.13 -0.1 5,957,868 + Psyr_5016 0.17 -0.4 5,957,868 + Psyr_5016 0.17 -1.7 5,957,868 + Psyr_5016 0.17 -0.5 5,957,868 + Psyr_5016 0.17 -0.8 5,957,868 + Psyr_5016 0.17 +0.9 5,957,868 + Psyr_5016 0.17 -0.3 5,957,868 + Psyr_5016 0.17 +0.9 5,957,868 + Psyr_5016 0.17 +2.3 5,957,868 + Psyr_5016 0.17 -0.3 5,957,869 - Psyr_5016 0.17 -0.6 5,957,869 - Psyr_5016 0.17 +0.8 5,957,869 - Psyr_5016 0.17 +0.5 5,957,869 - Psyr_5016 0.17 +2.3 5,958,090 + Psyr_5016 0.37 -0.8 5,958,091 - Psyr_5016 0.37 -0.6 5,958,247 + Psyr_5016 0.51 -0.8 5,958,247 + Psyr_5016 0.51 +0.3 5,958,247 + Psyr_5016 0.51 -0.4 5,958,247 + Psyr_5016 0.51 -1.5 5,958,248 - Psyr_5016 0.51 +0.9 5,958,248 - Psyr_5016 0.51 -2.5 5,958,322 - Psyr_5016 0.57 -0.0 5,958,666 + Psyr_5016 0.88 -0.3 5,958,667 - Psyr_5016 0.88 -0.6 5,958,838 + -0.0 5,958,839 - -1.7 5,958,839 - -0.5 5,958,839 - -1.1 5,958,839 - +1.3 5,958,868 + Psyr_5017 0.18 -0.6 5,958,868 + Psyr_5017 0.18 +0.8 5,958,868 + Psyr_5017 0.18 +0.3 5,958,868 + Psyr_5017 0.18 +1.3 5,958,868 + Psyr_5017 0.18 -0.5 5,958,868 + Psyr_5017 0.18 +1.2 5,958,869 - Psyr_5017 0.18 +0.9 5,958,869 - Psyr_5017 0.18 +0.2 5,958,869 - Psyr_5017 0.18 -1.3 5,958,869 - Psyr_5017 0.18 -1.0 5,958,877 + Psyr_5017 0.20 +0.8 5,959,149 - +0.1 5,959,158 + -0.3 5,959,158 + -0.2 5,959,158 + +0.5 5,959,158 + -0.7 5,959,159 - -2.0 5,959,159 - +0.1 5,959,159 - +0.1 5,959,338 + Psyr_5018 0.14 -0.4 5,959,338 + Psyr_5018 0.14 +1.3 5,959,339 - Psyr_5018 0.14 +1.3 5,959,339 - Psyr_5018 0.14 -2.3 5,959,339 - Psyr_5018 0.14 +0.3 5,959,469 + Psyr_5018 0.23 +0.8 5,959,469 + Psyr_5018 0.23 -1.0 5,959,472 - Psyr_5018 0.23 -0.1 5,959,472 - Psyr_5018 0.23 +1.0 5,959,472 - Psyr_5018 0.23 -0.6 5,959,472 - Psyr_5018 0.23 -0.4 5,959,472 - Psyr_5018 0.23 -0.9 5,959,472 - Psyr_5018 0.23 -0.5 5,959,580 + Psyr_5018 0.31 +0.9 5,959,580 + Psyr_5018 0.31 +0.6 5,959,580 + Psyr_5018 0.31 -0.1
Or see this region's nucleotide sequence