Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4471

Experiment: KB with capsaicin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4469 and Psyr_4470 are separated by 69 nucleotidesPsyr_4470 and Psyr_4471 are separated by 1 nucleotidesPsyr_4471 and Psyr_4472 are separated by 8 nucleotidesPsyr_4472 and Psyr_4473 are separated by 103 nucleotides Psyr_4469: Psyr_4469 - conserved hypothetical protein, at 5,329,987 to 5,330,574 _4469 Psyr_4470: Psyr_4470 - ABC transporter, at 5,330,644 to 5,331,354 _4470 Psyr_4471: Psyr_4471 - Protein of unknown function DUF214, at 5,331,356 to 5,332,621 _4471 Psyr_4472: Psyr_4472 - lipoprotein, putative, at 5,332,630 to 5,333,154 _4472 Psyr_4473: Psyr_4473 - OmpW, at 5,333,258 to 5,333,944 _4473 Position (kb) 5331 5332 5333Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5330.414 kb on - strand, within Psyr_4469at 5330.414 kb on - strand, within Psyr_4469at 5330.504 kb on + strand, within Psyr_4469at 5330.504 kb on + strand, within Psyr_4469at 5330.505 kb on - strand, within Psyr_4469at 5330.505 kb on - strand, within Psyr_4469at 5330.589 kb on - strandat 5330.589 kb on - strandat 5330.589 kb on - strandat 5330.617 kb on - strandat 5330.905 kb on + strand, within Psyr_4470at 5331.177 kb on + strand, within Psyr_4470at 5331.177 kb on + strand, within Psyr_4470at 5331.177 kb on + strand, within Psyr_4470at 5331.177 kb on + strand, within Psyr_4470at 5331.178 kb on - strand, within Psyr_4470at 5331.178 kb on - strand, within Psyr_4470at 5331.178 kb on - strand, within Psyr_4470at 5331.359 kb on + strandat 5331.359 kb on + strandat 5331.359 kb on + strandat 5331.359 kb on + strandat 5331.359 kb on + strandat 5331.359 kb on + strandat 5331.359 kb on + strandat 5331.359 kb on + strandat 5331.359 kb on + strandat 5331.359 kb on + strandat 5331.359 kb on + strandat 5331.359 kb on + strandat 5331.359 kb on + strandat 5331.359 kb on + strandat 5331.359 kb on + strandat 5331.359 kb on + strandat 5331.359 kb on + strandat 5331.359 kb on + strandat 5331.359 kb on + strandat 5331.359 kb on + strandat 5331.359 kb on + strandat 5331.359 kb on + strandat 5331.360 kb on - strandat 5331.360 kb on - strandat 5331.360 kb on - strandat 5331.360 kb on - strandat 5331.360 kb on - strandat 5331.360 kb on - strandat 5331.360 kb on - strandat 5331.360 kb on - strandat 5331.360 kb on - strandat 5331.360 kb on - strandat 5331.360 kb on - strandat 5331.360 kb on - strandat 5331.360 kb on - strandat 5331.360 kb on - strandat 5331.360 kb on - strandat 5331.360 kb on - strandat 5331.360 kb on - strandat 5331.360 kb on - strandat 5331.360 kb on - strandat 5331.560 kb on + strand, within Psyr_4471at 5331.560 kb on + strand, within Psyr_4471at 5331.561 kb on - strand, within Psyr_4471at 5331.561 kb on - strand, within Psyr_4471at 5331.710 kb on + strand, within Psyr_4471at 5331.711 kb on - strand, within Psyr_4471at 5331.711 kb on - strand, within Psyr_4471at 5331.711 kb on - strand, within Psyr_4471at 5331.723 kb on - strand, within Psyr_4471at 5331.827 kb on + strand, within Psyr_4471at 5331.827 kb on + strand, within Psyr_4471at 5331.827 kb on + strand, within Psyr_4471at 5331.827 kb on + strand, within Psyr_4471at 5331.827 kb on + strand, within Psyr_4471at 5331.828 kb on - strand, within Psyr_4471at 5331.828 kb on - strand, within Psyr_4471at 5331.828 kb on - strand, within Psyr_4471at 5331.828 kb on - strand, within Psyr_4471at 5331.958 kb on + strand, within Psyr_4471at 5332.055 kb on - strand, within Psyr_4471at 5332.055 kb on - strand, within Psyr_4471at 5332.372 kb on + strand, within Psyr_4471at 5332.372 kb on + strand, within Psyr_4471at 5332.372 kb on + strand, within Psyr_4471at 5332.373 kb on - strand, within Psyr_4471at 5332.373 kb on - strand, within Psyr_4471at 5332.373 kb on - strand, within Psyr_4471at 5332.373 kb on - strand, within Psyr_4471at 5332.374 kb on + strand, within Psyr_4471at 5332.374 kb on + strand, within Psyr_4471at 5332.375 kb on - strand, within Psyr_4471at 5332.375 kb on - strand, within Psyr_4471at 5332.375 kb on - strand, within Psyr_4471at 5332.375 kb on - strand, within Psyr_4471at 5332.430 kb on + strand, within Psyr_4471at 5332.430 kb on + strand, within Psyr_4471at 5332.430 kb on + strand, within Psyr_4471at 5332.430 kb on + strand, within Psyr_4471at 5332.430 kb on + strand, within Psyr_4471at 5332.430 kb on + strand, within Psyr_4471at 5332.430 kb on + strand, within Psyr_4471at 5332.431 kb on - strand, within Psyr_4471at 5332.431 kb on - strand, within Psyr_4471at 5332.431 kb on - strand, within Psyr_4471at 5332.431 kb on - strand, within Psyr_4471at 5332.431 kb on - strand, within Psyr_4471at 5332.431 kb on - strand, within Psyr_4471at 5332.457 kb on + strand, within Psyr_4471at 5332.457 kb on + strand, within Psyr_4471at 5332.457 kb on + strand, within Psyr_4471at 5332.458 kb on - strand, within Psyr_4471at 5332.458 kb on - strand, within Psyr_4471at 5332.472 kb on + strand, within Psyr_4471at 5332.472 kb on + strand, within Psyr_4471at 5332.473 kb on - strand, within Psyr_4471at 5332.473 kb on - strand, within Psyr_4471at 5332.482 kb on - strand, within Psyr_4471at 5332.492 kb on + strand, within Psyr_4471at 5332.492 kb on + strand, within Psyr_4471at 5332.493 kb on - strand, within Psyr_4471at 5332.509 kb on - strandat 5332.509 kb on - strandat 5332.521 kb on + strandat 5332.580 kb on + strandat 5332.581 kb on - strandat 5332.581 kb on - strandat 5332.646 kb on + strandat 5332.647 kb on - strandat 5332.770 kb on + strand, within Psyr_4472at 5332.770 kb on + strand, within Psyr_4472at 5332.770 kb on + strand, within Psyr_4472at 5332.770 kb on + strand, within Psyr_4472at 5332.770 kb on + strand, within Psyr_4472at 5332.771 kb on - strand, within Psyr_4472at 5332.771 kb on - strand, within Psyr_4472at 5332.771 kb on - strand, within Psyr_4472at 5332.885 kb on + strand, within Psyr_4472at 5332.885 kb on + strand, within Psyr_4472at 5332.886 kb on - strand, within Psyr_4472at 5332.945 kb on + strand, within Psyr_4472at 5332.945 kb on + strand, within Psyr_4472at 5332.946 kb on - strand, within Psyr_4472at 5333.035 kb on + strand, within Psyr_4472at 5333.153 kb on - strandat 5333.153 kb on - strandat 5333.222 kb on + strandat 5333.222 kb on + strandat 5333.222 kb on + strandat 5333.223 kb on - strandat 5333.231 kb on - strandat 5333.474 kb on + strand, within Psyr_4473at 5333.475 kb on - strand, within Psyr_4473at 5333.475 kb on - strand, within Psyr_4473at 5333.475 kb on - strand, within Psyr_4473at 5333.475 kb on - strand, within Psyr_4473at 5333.530 kb on + strand, within Psyr_4473at 5333.530 kb on + strand, within Psyr_4473at 5333.616 kb on - strand, within Psyr_4473

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml
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5,330,414 - Psyr_4469 0.73 +0.6
5,330,414 - Psyr_4469 0.73 +0.2
5,330,504 + Psyr_4469 0.88 +0.2
5,330,504 + Psyr_4469 0.88 -0.2
5,330,505 - Psyr_4469 0.88 +1.1
5,330,505 - Psyr_4469 0.88 -0.8
5,330,589 - +0.5
5,330,589 - +0.5
5,330,589 - -0.3
5,330,617 - +0.2
5,330,905 + Psyr_4470 0.37 +0.4
5,331,177 + Psyr_4470 0.75 -0.9
5,331,177 + Psyr_4470 0.75 -0.4
5,331,177 + Psyr_4470 0.75 +1.7
5,331,177 + Psyr_4470 0.75 -0.8
5,331,178 - Psyr_4470 0.75 +1.0
5,331,178 - Psyr_4470 0.75 +0.9
5,331,178 - Psyr_4470 0.75 +0.8
5,331,359 + -0.5
5,331,359 + +0.7
5,331,359 + +0.3
5,331,359 + +1.0
5,331,359 + -0.3
5,331,359 + -0.5
5,331,359 + +1.1
5,331,359 + -0.2
5,331,359 + -1.0
5,331,359 + -0.3
5,331,359 + +0.3
5,331,359 + +1.8
5,331,359 + -0.5
5,331,359 + -1.4
5,331,359 + +1.1
5,331,359 + -0.7
5,331,359 + +0.7
5,331,359 + +0.6
5,331,359 + +0.4
5,331,359 + -0.5
5,331,359 + +0.9
5,331,359 + +3.1
5,331,360 - +0.2
5,331,360 - +0.6
5,331,360 - +0.9
5,331,360 - -0.6
5,331,360 - +0.3
5,331,360 - +0.1
5,331,360 - +0.3
5,331,360 - +0.0
5,331,360 - +0.9
5,331,360 - +0.5
5,331,360 - +1.0
5,331,360 - -0.7
5,331,360 - +0.1
5,331,360 - -0.7
5,331,360 - +0.9
5,331,360 - -0.2
5,331,360 - +0.9
5,331,360 - +1.5
5,331,360 - -0.2
5,331,560 + Psyr_4471 0.16 +0.1
5,331,560 + Psyr_4471 0.16 +0.0
5,331,561 - Psyr_4471 0.16 -0.2
5,331,561 - Psyr_4471 0.16 +1.1
5,331,710 + Psyr_4471 0.28 -0.5
5,331,711 - Psyr_4471 0.28 +0.1
5,331,711 - Psyr_4471 0.28 +1.5
5,331,711 - Psyr_4471 0.28 -1.4
5,331,723 - Psyr_4471 0.29 -1.8
5,331,827 + Psyr_4471 0.37 -0.3
5,331,827 + Psyr_4471 0.37 -1.0
5,331,827 + Psyr_4471 0.37 -0.9
5,331,827 + Psyr_4471 0.37 +0.3
5,331,827 + Psyr_4471 0.37 +1.3
5,331,828 - Psyr_4471 0.37 +0.3
5,331,828 - Psyr_4471 0.37 +0.2
5,331,828 - Psyr_4471 0.37 -1.2
5,331,828 - Psyr_4471 0.37 -0.4
5,331,958 + Psyr_4471 0.48 +0.1
5,332,055 - Psyr_4471 0.55 +0.1
5,332,055 - Psyr_4471 0.55 +0.6
5,332,372 + Psyr_4471 0.80 +0.9
5,332,372 + Psyr_4471 0.80 -1.0
5,332,372 + Psyr_4471 0.80 +0.5
5,332,373 - Psyr_4471 0.80 +0.1
5,332,373 - Psyr_4471 0.80 +0.9
5,332,373 - Psyr_4471 0.80 -0.0
5,332,373 - Psyr_4471 0.80 +1.1
5,332,374 + Psyr_4471 0.80 +1.5
5,332,374 + Psyr_4471 0.80 -0.5
5,332,375 - Psyr_4471 0.80 +0.5
5,332,375 - Psyr_4471 0.80 +0.2
5,332,375 - Psyr_4471 0.80 -0.2
5,332,375 - Psyr_4471 0.80 +0.1
5,332,430 + Psyr_4471 0.85 +1.9
5,332,430 + Psyr_4471 0.85 -1.0
5,332,430 + Psyr_4471 0.85 +0.8
5,332,430 + Psyr_4471 0.85 -0.1
5,332,430 + Psyr_4471 0.85 -1.0
5,332,430 + Psyr_4471 0.85 +0.5
5,332,430 + Psyr_4471 0.85 -2.4
5,332,431 - Psyr_4471 0.85 +2.7
5,332,431 - Psyr_4471 0.85 +0.4
5,332,431 - Psyr_4471 0.85 +0.9
5,332,431 - Psyr_4471 0.85 +0.5
5,332,431 - Psyr_4471 0.85 +0.7
5,332,431 - Psyr_4471 0.85 +1.0
5,332,457 + Psyr_4471 0.87 +0.5
5,332,457 + Psyr_4471 0.87 -0.2
5,332,457 + Psyr_4471 0.87 +1.6
5,332,458 - Psyr_4471 0.87 -0.4
5,332,458 - Psyr_4471 0.87 -0.9
5,332,472 + Psyr_4471 0.88 +1.5
5,332,472 + Psyr_4471 0.88 -0.6
5,332,473 - Psyr_4471 0.88 +1.5
5,332,473 - Psyr_4471 0.88 +0.5
5,332,482 - Psyr_4471 0.89 +0.5
5,332,492 + Psyr_4471 0.90 -0.3
5,332,492 + Psyr_4471 0.90 +4.6
5,332,493 - Psyr_4471 0.90 +1.6
5,332,509 - +0.2
5,332,509 - -0.4
5,332,521 + +1.1
5,332,580 + -3.1
5,332,581 - +0.8
5,332,581 - +0.5
5,332,646 + +0.9
5,332,647 - -0.1
5,332,770 + Psyr_4472 0.27 -0.5
5,332,770 + Psyr_4472 0.27 +0.6
5,332,770 + Psyr_4472 0.27 +1.2
5,332,770 + Psyr_4472 0.27 -1.1
5,332,770 + Psyr_4472 0.27 -1.7
5,332,771 - Psyr_4472 0.27 +0.8
5,332,771 - Psyr_4472 0.27 -0.6
5,332,771 - Psyr_4472 0.27 +0.8
5,332,885 + Psyr_4472 0.49 -0.1
5,332,885 + Psyr_4472 0.49 -0.5
5,332,886 - Psyr_4472 0.49 -0.2
5,332,945 + Psyr_4472 0.60 -0.3
5,332,945 + Psyr_4472 0.60 +0.8
5,332,946 - Psyr_4472 0.60 +1.1
5,333,035 + Psyr_4472 0.77 +0.5
5,333,153 - +1.2
5,333,153 - -0.6
5,333,222 + -0.9
5,333,222 + +0.3
5,333,222 + -0.1
5,333,223 - +0.4
5,333,231 - -0.0
5,333,474 + Psyr_4473 0.31 -2.9
5,333,475 - Psyr_4473 0.32 -0.8
5,333,475 - Psyr_4473 0.32 +0.1
5,333,475 - Psyr_4473 0.32 +0.1
5,333,475 - Psyr_4473 0.32 -0.9
5,333,530 + Psyr_4473 0.40 -1.2
5,333,530 + Psyr_4473 0.40 -0.9
5,333,616 - Psyr_4473 0.52 +0.4

Or see this region's nucleotide sequence