Experiment: KB with capsaicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4436 and Psyr_4437 are separated by 51 nucleotides Psyr_4437 and Psyr_4438 are separated by 13 nucleotides Psyr_4438 and Psyr_4439 are separated by 112 nucleotides
Psyr_4436: Psyr_4436 - urease, Metallo peptidase, MEROPS family M38, at 5,302,524 to 5,304,224
_4436
Psyr_4437: Psyr_4437 - hypothetical protein, at 5,304,276 to 5,304,884
_4437
Psyr_4438: Psyr_4438 - hypothetical protein, at 5,304,898 to 5,305,329
_4438
Psyr_4439: Psyr_4439 - histidine kinase, at 5,305,442 to 5,306,572
_4439
Position (kb) 5304
5305 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5303.331 kb on + strand, within Psyr_4436 at 5303.331 kb on + strand, within Psyr_4436 at 5303.331 kb on + strand, within Psyr_4436 at 5303.331 kb on + strand, within Psyr_4436 at 5303.332 kb on - strand, within Psyr_4436 at 5303.332 kb on - strand, within Psyr_4436 at 5303.332 kb on - strand, within Psyr_4436 at 5303.332 kb on - strand, within Psyr_4436 at 5303.332 kb on - strand, within Psyr_4436 at 5303.727 kb on + strand, within Psyr_4436 at 5303.727 kb on + strand, within Psyr_4436 at 5303.727 kb on + strand, within Psyr_4436 at 5303.727 kb on + strand, within Psyr_4436 at 5303.727 kb on + strand, within Psyr_4436 at 5303.728 kb on - strand, within Psyr_4436 at 5303.728 kb on - strand, within Psyr_4436 at 5303.728 kb on - strand, within Psyr_4436 at 5303.739 kb on + strand, within Psyr_4436 at 5303.739 kb on + strand, within Psyr_4436 at 5303.739 kb on + strand, within Psyr_4436 at 5303.739 kb on + strand, within Psyr_4436 at 5303.739 kb on + strand, within Psyr_4436 at 5303.739 kb on + strand, within Psyr_4436 at 5303.739 kb on + strand, within Psyr_4436 at 5303.740 kb on - strand, within Psyr_4436 at 5303.740 kb on - strand, within Psyr_4436 at 5303.740 kb on - strand, within Psyr_4436 at 5303.740 kb on - strand, within Psyr_4436 at 5303.740 kb on - strand, within Psyr_4436 at 5303.802 kb on - strand, within Psyr_4436 at 5303.802 kb on - strand, within Psyr_4436 at 5304.109 kb on - strand at 5304.109 kb on - strand at 5304.109 kb on - strand at 5304.141 kb on + strand at 5304.141 kb on + strand at 5304.142 kb on - strand at 5304.169 kb on + strand at 5304.170 kb on - strand at 5304.210 kb on + strand at 5304.261 kb on + strand at 5304.261 kb on + strand at 5304.262 kb on - strand at 5304.265 kb on + strand at 5304.265 kb on + strand at 5304.266 kb on - strand at 5304.266 kb on - strand at 5304.277 kb on + strand at 5304.389 kb on + strand, within Psyr_4437 at 5304.403 kb on + strand, within Psyr_4437 at 5304.403 kb on + strand, within Psyr_4437 at 5304.404 kb on - strand, within Psyr_4437 at 5304.404 kb on - strand, within Psyr_4437 at 5304.404 kb on - strand, within Psyr_4437 at 5304.478 kb on - strand, within Psyr_4437 at 5304.478 kb on - strand, within Psyr_4437 at 5304.506 kb on + strand, within Psyr_4437 at 5304.506 kb on + strand, within Psyr_4437 at 5304.507 kb on - strand, within Psyr_4437 at 5304.507 kb on - strand, within Psyr_4437 at 5304.507 kb on - strand, within Psyr_4437 at 5304.507 kb on - strand at 5304.844 kb on - strand at 5304.900 kb on - strand at 5305.018 kb on + strand, within Psyr_4438 at 5305.018 kb on + strand, within Psyr_4438 at 5305.018 kb on + strand, within Psyr_4438 at 5305.019 kb on - strand, within Psyr_4438 at 5305.019 kb on - strand, within Psyr_4438 at 5305.019 kb on - strand, within Psyr_4438 at 5305.019 kb on - strand, within Psyr_4438 at 5305.026 kb on - strand, within Psyr_4438 at 5305.112 kb on + strand, within Psyr_4438 at 5305.112 kb on + strand, within Psyr_4438 at 5305.112 kb on + strand, within Psyr_4438 at 5305.113 kb on - strand, within Psyr_4438 at 5305.113 kb on - strand, within Psyr_4438 at 5305.180 kb on + strand, within Psyr_4438 at 5305.180 kb on + strand, within Psyr_4438 at 5305.180 kb on + strand, within Psyr_4438 at 5305.181 kb on - strand, within Psyr_4438 at 5305.263 kb on + strand, within Psyr_4438 at 5305.264 kb on - strand, within Psyr_4438 at 5305.273 kb on + strand, within Psyr_4438 at 5305.273 kb on + strand, within Psyr_4438 at 5305.274 kb on - strand, within Psyr_4438 at 5305.274 kb on - strand, within Psyr_4438 at 5305.274 kb on - strand, within Psyr_4438 at 5305.296 kb on + strand at 5305.320 kb on + strand at 5305.320 kb on + strand at 5305.320 kb on + strand at 5305.320 kb on + strand at 5305.320 kb on + strand at 5305.320 kb on + strand at 5305.320 kb on + strand at 5305.321 kb on - strand at 5305.321 kb on - strand at 5305.321 kb on - strand at 5305.329 kb on + strand at 5305.343 kb on + strand at 5305.343 kb on + strand at 5305.343 kb on + strand at 5305.361 kb on + strand at 5305.361 kb on + strand at 5305.362 kb on - strand at 5305.362 kb on - strand at 5305.362 kb on - strand at 5305.398 kb on + strand at 5305.398 kb on + strand at 5305.398 kb on + strand at 5305.399 kb on - strand at 5305.399 kb on - strand at 5305.399 kb on - strand at 5305.399 kb on - strand at 5305.399 kb on - strand at 5305.434 kb on - strand at 5305.465 kb on + strand at 5305.780 kb on - strand, within Psyr_4439 at 5305.875 kb on - strand, within Psyr_4439
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml remove 5,303,331 + Psyr_4436 0.47 +1.0 5,303,331 + Psyr_4436 0.47 -1.0 5,303,331 + Psyr_4436 0.47 -0.8 5,303,331 + Psyr_4436 0.47 +0.8 5,303,332 - Psyr_4436 0.48 +1.1 5,303,332 - Psyr_4436 0.48 +0.5 5,303,332 - Psyr_4436 0.48 +1.5 5,303,332 - Psyr_4436 0.48 +1.8 5,303,332 - Psyr_4436 0.48 -0.5 5,303,727 + Psyr_4436 0.71 +1.5 5,303,727 + Psyr_4436 0.71 +1.4 5,303,727 + Psyr_4436 0.71 -1.1 5,303,727 + Psyr_4436 0.71 +0.2 5,303,727 + Psyr_4436 0.71 -0.1 5,303,728 - Psyr_4436 0.71 +0.8 5,303,728 - Psyr_4436 0.71 -0.0 5,303,728 - Psyr_4436 0.71 +1.6 5,303,739 + Psyr_4436 0.71 +1.1 5,303,739 + Psyr_4436 0.71 -2.6 5,303,739 + Psyr_4436 0.71 -0.4 5,303,739 + Psyr_4436 0.71 +2.1 5,303,739 + Psyr_4436 0.71 +1.1 5,303,739 + Psyr_4436 0.71 +0.5 5,303,739 + Psyr_4436 0.71 -1.2 5,303,740 - Psyr_4436 0.71 +0.6 5,303,740 - Psyr_4436 0.71 +1.7 5,303,740 - Psyr_4436 0.71 +0.7 5,303,740 - Psyr_4436 0.71 -0.3 5,303,740 - Psyr_4436 0.71 +0.1 5,303,802 - Psyr_4436 0.75 +0.8 5,303,802 - Psyr_4436 0.75 -0.9 5,304,109 - +0.7 5,304,109 - -0.5 5,304,109 - -1.2 5,304,141 + -0.1 5,304,141 + +0.4 5,304,142 - -0.2 5,304,169 + +1.4 5,304,170 - +0.2 5,304,210 + +0.3 5,304,261 + +0.1 5,304,261 + -0.2 5,304,262 - +1.1 5,304,265 + +0.5 5,304,265 + -0.4 5,304,266 - +1.1 5,304,266 - +0.9 5,304,277 + +0.1 5,304,389 + Psyr_4437 0.19 -0.2 5,304,403 + Psyr_4437 0.21 -0.8 5,304,403 + Psyr_4437 0.21 -0.5 5,304,404 - Psyr_4437 0.21 -0.9 5,304,404 - Psyr_4437 0.21 -0.1 5,304,404 - Psyr_4437 0.21 -0.9 5,304,478 - Psyr_4437 0.33 +0.5 5,304,478 - Psyr_4437 0.33 -1.5 5,304,506 + Psyr_4437 0.38 +1.1 5,304,506 + Psyr_4437 0.38 -1.2 5,304,507 - Psyr_4437 0.38 -0.9 5,304,507 - Psyr_4437 0.38 -1.0 5,304,507 - Psyr_4437 0.38 -0.9 5,304,507 - -0.5 5,304,844 - -0.4 5,304,900 - +1.1 5,305,018 + Psyr_4438 0.28 -2.1 5,305,018 + Psyr_4438 0.28 -0.3 5,305,018 + Psyr_4438 0.28 +0.5 5,305,019 - Psyr_4438 0.28 -0.7 5,305,019 - Psyr_4438 0.28 +0.6 5,305,019 - Psyr_4438 0.28 +0.6 5,305,019 - Psyr_4438 0.28 +0.0 5,305,026 - Psyr_4438 0.30 -0.6 5,305,112 + Psyr_4438 0.50 -0.2 5,305,112 + Psyr_4438 0.50 +1.3 5,305,112 + Psyr_4438 0.50 -2.2 5,305,113 - Psyr_4438 0.50 -1.3 5,305,113 - Psyr_4438 0.50 -0.5 5,305,180 + Psyr_4438 0.65 -0.0 5,305,180 + Psyr_4438 0.65 +1.1 5,305,180 + Psyr_4438 0.65 +1.6 5,305,181 - Psyr_4438 0.66 -0.7 5,305,263 + Psyr_4438 0.84 -1.6 5,305,264 - Psyr_4438 0.85 -0.9 5,305,273 + Psyr_4438 0.87 +0.1 5,305,273 + Psyr_4438 0.87 +0.4 5,305,274 - Psyr_4438 0.87 -0.3 5,305,274 - Psyr_4438 0.87 -0.2 5,305,274 - Psyr_4438 0.87 +0.3 5,305,296 + -0.4 5,305,320 + -0.9 5,305,320 + -0.5 5,305,320 + +0.3 5,305,320 + +0.0 5,305,320 + +1.1 5,305,320 + -0.1 5,305,320 + +0.4 5,305,321 - -0.8 5,305,321 - +1.5 5,305,321 - +0.8 5,305,329 + +0.9 5,305,343 + -1.2 5,305,343 + +0.5 5,305,343 + -0.2 5,305,361 + -0.2 5,305,361 + +0.3 5,305,362 - +0.6 5,305,362 - -1.1 5,305,362 - +0.8 5,305,398 + -1.1 5,305,398 + -2.0 5,305,398 + -1.0 5,305,399 - +0.1 5,305,399 - -0.4 5,305,399 - -0.3 5,305,399 - +1.0 5,305,399 - -0.6 5,305,434 - -0.0 5,305,465 + -0.5 5,305,780 - Psyr_4439 0.30 +0.4 5,305,875 - Psyr_4439 0.38 +1.1
Or see this region's nucleotide sequence