Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4294

Experiment: KB with capsaicin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4293 and Psyr_4294 are separated by 139 nucleotidesPsyr_4294 and Psyr_4295 are separated by 120 nucleotides Psyr_4293: Psyr_4293 - Acyl-CoA thioesterase, at 5,119,626 to 5,120,495 _4293 Psyr_4294: Psyr_4294 - Histone deacetylase family protein, at 5,120,635 to 5,121,204 _4294 Psyr_4295: Psyr_4295 - Histone deacetylase superfamily, at 5,121,325 to 5,122,242 _4295 Position (kb) 5120 5121 5122Strain fitness (log2 ratio) -2 -1 0 1at 5119.640 kb on + strandat 5119.641 kb on - strandat 5119.641 kb on - strandat 5119.703 kb on + strandat 5119.703 kb on + strandat 5119.703 kb on + strandat 5119.703 kb on + strandat 5119.757 kb on - strand, within Psyr_4293at 5119.895 kb on - strand, within Psyr_4293at 5119.895 kb on - strand, within Psyr_4293at 5119.906 kb on + strand, within Psyr_4293at 5119.906 kb on + strand, within Psyr_4293at 5119.906 kb on + strand, within Psyr_4293at 5119.907 kb on - strand, within Psyr_4293at 5119.907 kb on - strand, within Psyr_4293at 5119.907 kb on - strand, within Psyr_4293at 5119.907 kb on - strand, within Psyr_4293at 5119.907 kb on - strand, within Psyr_4293at 5119.960 kb on + strand, within Psyr_4293at 5119.960 kb on + strand, within Psyr_4293at 5119.960 kb on + strand, within Psyr_4293at 5119.961 kb on - strand, within Psyr_4293at 5119.961 kb on - strand, within Psyr_4293at 5119.961 kb on - strand, within Psyr_4293at 5119.961 kb on - strand, within Psyr_4293at 5119.961 kb on - strand, within Psyr_4293at 5120.269 kb on + strand, within Psyr_4293at 5120.420 kb on + strandat 5120.510 kb on + strandat 5120.510 kb on + strandat 5120.511 kb on - strandat 5120.511 kb on - strandat 5120.511 kb on - strandat 5120.511 kb on - strandat 5120.529 kb on + strandat 5120.529 kb on + strandat 5120.530 kb on - strandat 5120.593 kb on + strandat 5120.594 kb on - strandat 5120.594 kb on - strandat 5120.601 kb on + strandat 5120.601 kb on + strandat 5120.602 kb on - strandat 5120.602 kb on - strandat 5120.602 kb on - strandat 5120.602 kb on - strandat 5120.602 kb on - strandat 5120.602 kb on - strandat 5120.602 kb on - strandat 5120.615 kb on + strandat 5120.616 kb on - strandat 5120.616 kb on - strandat 5120.974 kb on + strand, within Psyr_4294at 5120.974 kb on + strand, within Psyr_4294at 5120.975 kb on - strand, within Psyr_4294at 5120.975 kb on - strand, within Psyr_4294at 5120.975 kb on - strand, within Psyr_4294at 5121.285 kb on + strandat 5121.286 kb on - strandat 5121.340 kb on - strandat 5121.343 kb on + strandat 5121.343 kb on + strandat 5121.343 kb on + strandat 5121.343 kb on + strandat 5121.343 kb on + strandat 5121.343 kb on + strandat 5121.343 kb on + strandat 5121.343 kb on + strandat 5121.343 kb on + strandat 5121.343 kb on + strandat 5121.343 kb on + strandat 5121.344 kb on - strandat 5121.344 kb on - strandat 5121.344 kb on - strandat 5121.344 kb on - strandat 5121.344 kb on - strandat 5121.344 kb on - strandat 5121.355 kb on + strandat 5121.355 kb on + strandat 5121.355 kb on + strandat 5121.356 kb on - strandat 5121.418 kb on + strand, within Psyr_4295at 5121.418 kb on + strand, within Psyr_4295at 5121.418 kb on + strand, within Psyr_4295at 5121.419 kb on - strand, within Psyr_4295at 5121.419 kb on - strand, within Psyr_4295at 5121.455 kb on + strand, within Psyr_4295at 5121.455 kb on + strand, within Psyr_4295at 5121.456 kb on - strand, within Psyr_4295at 5121.456 kb on - strand, within Psyr_4295at 5121.511 kb on + strand, within Psyr_4295at 5121.511 kb on + strand, within Psyr_4295at 5121.511 kb on + strand, within Psyr_4295at 5121.511 kb on + strand, within Psyr_4295at 5121.511 kb on + strand, within Psyr_4295at 5121.511 kb on + strand, within Psyr_4295at 5121.512 kb on - strand, within Psyr_4295at 5121.512 kb on - strand, within Psyr_4295at 5121.512 kb on - strand, within Psyr_4295at 5121.512 kb on - strand, within Psyr_4295at 5121.512 kb on - strand, within Psyr_4295at 5121.528 kb on + strand, within Psyr_4295at 5121.694 kb on + strand, within Psyr_4295at 5121.694 kb on + strand, within Psyr_4295at 5121.694 kb on + strand, within Psyr_4295at 5121.694 kb on + strand, within Psyr_4295at 5121.695 kb on - strand, within Psyr_4295at 5121.695 kb on - strand, within Psyr_4295at 5121.695 kb on - strand, within Psyr_4295at 5121.695 kb on - strand, within Psyr_4295at 5121.748 kb on + strand, within Psyr_4295at 5121.748 kb on + strand, within Psyr_4295at 5121.749 kb on - strand, within Psyr_4295at 5121.947 kb on - strand, within Psyr_4295at 5121.976 kb on + strand, within Psyr_4295at 5121.976 kb on + strand, within Psyr_4295at 5121.977 kb on - strand, within Psyr_4295at 5121.977 kb on - strand, within Psyr_4295at 5121.977 kb on - strand, within Psyr_4295at 5121.977 kb on - strand, within Psyr_4295at 5121.977 kb on - strand, within Psyr_4295at 5121.977 kb on - strand, within Psyr_4295at 5121.991 kb on + strand, within Psyr_4295at 5121.991 kb on + strand, within Psyr_4295at 5121.991 kb on + strand, within Psyr_4295at 5121.992 kb on - strand, within Psyr_4295at 5121.993 kb on + strand, within Psyr_4295at 5121.994 kb on - strand, within Psyr_4295at 5121.994 kb on - strand, within Psyr_4295at 5121.994 kb on - strand, within Psyr_4295at 5122.012 kb on + strand, within Psyr_4295at 5122.013 kb on - strandat 5122.013 kb on - strand, within Psyr_4295at 5122.013 kb on - strand, within Psyr_4295at 5122.013 kb on - strand, within Psyr_4295at 5122.055 kb on - strand, within Psyr_4295

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml
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5,119,640 + +0.1
5,119,641 - +0.5
5,119,641 - -0.0
5,119,703 + +0.6
5,119,703 + -0.0
5,119,703 + +0.6
5,119,703 + +1.0
5,119,757 - Psyr_4293 0.15 -0.6
5,119,895 - Psyr_4293 0.31 +0.9
5,119,895 - Psyr_4293 0.31 +1.4
5,119,906 + Psyr_4293 0.32 +0.7
5,119,906 + Psyr_4293 0.32 -0.4
5,119,906 + Psyr_4293 0.32 -0.0
5,119,907 - Psyr_4293 0.32 +0.4
5,119,907 - Psyr_4293 0.32 -0.4
5,119,907 - Psyr_4293 0.32 +0.8
5,119,907 - Psyr_4293 0.32 -0.4
5,119,907 - Psyr_4293 0.32 -0.3
5,119,960 + Psyr_4293 0.38 -0.5
5,119,960 + Psyr_4293 0.38 +1.7
5,119,960 + Psyr_4293 0.38 +0.6
5,119,961 - Psyr_4293 0.39 -0.0
5,119,961 - Psyr_4293 0.39 -1.5
5,119,961 - Psyr_4293 0.39 -0.0
5,119,961 - Psyr_4293 0.39 -0.4
5,119,961 - Psyr_4293 0.39 +0.9
5,120,269 + Psyr_4293 0.74 -0.4
5,120,420 + -0.1
5,120,510 + -1.4
5,120,510 + -0.7
5,120,511 - -1.5
5,120,511 - +0.3
5,120,511 - +1.3
5,120,511 - -0.6
5,120,529 + +0.4
5,120,529 + +0.1
5,120,530 - +1.3
5,120,593 + +0.2
5,120,594 - -0.8
5,120,594 - +0.3
5,120,601 + -1.5
5,120,601 + -1.1
5,120,602 - +0.3
5,120,602 - -0.0
5,120,602 - +1.2
5,120,602 - +0.2
5,120,602 - +0.3
5,120,602 - -0.3
5,120,602 - +0.5
5,120,615 + -0.0
5,120,616 - +0.4
5,120,616 - +0.8
5,120,974 + Psyr_4294 0.59 -0.7
5,120,974 + Psyr_4294 0.59 -1.8
5,120,975 - Psyr_4294 0.60 -0.5
5,120,975 - Psyr_4294 0.60 -1.6
5,120,975 - Psyr_4294 0.60 -0.5
5,121,285 + -1.2
5,121,286 - -0.1
5,121,340 - -0.0
5,121,343 + +0.2
5,121,343 + +0.6
5,121,343 + -0.2
5,121,343 + +1.0
5,121,343 + +1.2
5,121,343 + +0.6
5,121,343 + +0.5
5,121,343 + -1.0
5,121,343 + -0.0
5,121,343 + +1.1
5,121,343 + +0.8
5,121,344 - +0.3
5,121,344 - -0.8
5,121,344 - +1.1
5,121,344 - -0.4
5,121,344 - -0.3
5,121,344 - -0.4
5,121,355 + +0.2
5,121,355 + -0.4
5,121,355 + -0.0
5,121,356 - -0.3
5,121,418 + Psyr_4295 0.10 +1.5
5,121,418 + Psyr_4295 0.10 +1.3
5,121,418 + Psyr_4295 0.10 -0.8
5,121,419 - Psyr_4295 0.10 +0.5
5,121,419 - Psyr_4295 0.10 +1.2
5,121,455 + Psyr_4295 0.14 +0.3
5,121,455 + Psyr_4295 0.14 -0.9
5,121,456 - Psyr_4295 0.14 +0.2
5,121,456 - Psyr_4295 0.14 +0.8
5,121,511 + Psyr_4295 0.20 +0.6
5,121,511 + Psyr_4295 0.20 -0.9
5,121,511 + Psyr_4295 0.20 -0.3
5,121,511 + Psyr_4295 0.20 +1.0
5,121,511 + Psyr_4295 0.20 -1.4
5,121,511 + Psyr_4295 0.20 -0.6
5,121,512 - Psyr_4295 0.20 +0.5
5,121,512 - Psyr_4295 0.20 +0.2
5,121,512 - Psyr_4295 0.20 +0.8
5,121,512 - Psyr_4295 0.20 -1.4
5,121,512 - Psyr_4295 0.20 -0.6
5,121,528 + Psyr_4295 0.22 +0.2
5,121,694 + Psyr_4295 0.40 -0.8
5,121,694 + Psyr_4295 0.40 -2.2
5,121,694 + Psyr_4295 0.40 -0.6
5,121,694 + Psyr_4295 0.40 -0.1
5,121,695 - Psyr_4295 0.40 -0.5
5,121,695 - Psyr_4295 0.40 +0.4
5,121,695 - Psyr_4295 0.40 -0.6
5,121,695 - Psyr_4295 0.40 +1.4
5,121,748 + Psyr_4295 0.46 -0.4
5,121,748 + Psyr_4295 0.46 +0.3
5,121,749 - Psyr_4295 0.46 -0.7
5,121,947 - Psyr_4295 0.68 -1.3
5,121,976 + Psyr_4295 0.71 +0.9
5,121,976 + Psyr_4295 0.71 +0.7
5,121,977 - Psyr_4295 0.71 -0.0
5,121,977 - Psyr_4295 0.71 -2.2
5,121,977 - Psyr_4295 0.71 -0.5
5,121,977 - Psyr_4295 0.71 -0.0
5,121,977 - Psyr_4295 0.71 +0.7
5,121,977 - Psyr_4295 0.71 -2.2
5,121,991 + Psyr_4295 0.73 +0.1
5,121,991 + Psyr_4295 0.73 -0.4
5,121,991 + Psyr_4295 0.73 +0.5
5,121,992 - Psyr_4295 0.73 -0.1
5,121,993 + Psyr_4295 0.73 -0.0
5,121,994 - Psyr_4295 0.73 -0.0
5,121,994 - Psyr_4295 0.73 -0.3
5,121,994 - Psyr_4295 0.73 -0.6
5,122,012 + Psyr_4295 0.75 -1.8
5,122,013 - +0.2
5,122,013 - Psyr_4295 0.75 -0.4
5,122,013 - Psyr_4295 0.75 -2.0
5,122,013 - Psyr_4295 0.75 +0.0
5,122,055 - Psyr_4295 0.80 +0.1

Or see this region's nucleotide sequence