Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4087

Experiment: KB with capsaicin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.125 mg/ml
4,872,009	+				+0.6
4,872,010	-				+1.7
4,872,024	+				-1.5
4,872,025	-				+1.1
4,872,166	+		Psyr_4086	0.17	-0.4
4,872,166	+		Psyr_4086	0.17	-0.4
4,872,166	+		Psyr_4086	0.17	-0.4
4,872,166	+		Psyr_4086	0.17	-1.3
4,872,166	+		Psyr_4086	0.17	-1.1
4,872,166	+		Psyr_4086	0.17	-1.8
4,872,167	-		Psyr_4086	0.17	+0.7
4,872,167	-		Psyr_4086	0.17	+0.2
4,872,167	-		Psyr_4086	0.17	+0.7
4,872,167	-		Psyr_4086	0.17	-0.7
4,872,167	-		Psyr_4086	0.17	-0.4
4,872,167	-		Psyr_4086	0.17	-0.4
4,872,743	+		Psyr_4086	0.87	+0.1
4,872,784	-				-0.5
4,872,858	-				-1.1
4,872,865	+				+0.7
4,872,865	+				+0.7
4,873,366	+		Psyr_4087	0.81	-1.0
4,873,389	-		Psyr_4087	0.86	-1.7
4,873,437	+				-2.4
4,873,437	+				-1.1
4,873,437	+				-0.2
4,873,437	+				+0.6
4,873,437	+				+0.4
4,873,437	+				-0.2
4,873,438	-				+0.6
4,873,438	-				+0.7
4,873,438	-				+1.1
4,873,438	-				-0.3
4,873,438	-				+0.1
4,873,438	-				-0.4
4,873,456	+				-0.8
4,873,456	+				+0.8
4,873,456	+				+0.1
4,873,456	+				-1.7
4,873,456	+				+0.1
4,873,456	+				-0.4
4,873,456	+				+0.1
4,873,456	+				+0.4
4,873,456	+				+1.1
4,873,456	+				-1.4
4,873,456	+				-0.0
4,873,456	+				+1.2
4,873,456	+				+2.1
4,873,456	+				+3.4
4,873,456	+				+0.6
4,873,456	+				-1.3
4,873,456	+				-0.5
4,873,456	+				+1.7
4,873,456	+				+0.5
4,873,456	+				-0.5
4,873,456	+				-0.4
4,873,456	+				+0.1
4,873,456	+				+0.1
4,873,456	+				-1.5
4,873,456	+				-1.9
4,873,456	+				-0.3
4,873,456	+				+0.7
4,873,456	+				-0.7
4,873,456	+				+0.2
4,873,456	+				-0.8
4,873,456	+				+0.2
4,873,456	+				+0.4
4,873,456	+				+1.6
4,873,456	+				-0.1
4,873,456	+				+0.2
4,873,456	+				-0.9
4,873,457	-				+0.0
4,873,457	-				-0.6
4,873,457	-				-0.3
4,873,457	-				-0.2
4,873,457	-				-0.2
4,873,457	-				+0.3
4,873,457	-				-0.5
4,873,457	-				-0.5
4,873,457	-				+0.3
4,873,457	-				+0.2
4,873,457	-				+0.5
4,873,457	-				+0.8
4,873,457	-				+0.3
4,873,457	-				-0.6
4,873,457	-				+0.3
4,873,457	-				+1.5
4,873,457	-				-0.1
4,873,457	-				+0.6
4,873,457	-				-0.6
4,873,457	-				+0.3
4,873,457	-				+0.2
4,873,457	-				-0.7
4,873,457	-				-1.6
4,873,457	-				+1.5
4,873,457	-				+1.7
4,873,457	-				+0.4
4,873,457	-				+0.9
4,873,457	-				-0.2
4,873,457	-				-0.9
4,873,457	-				+0.5
4,873,457	-				+0.9
4,873,457	-				+0.0
4,873,457	-				-0.5
4,873,457	-				+0.7
4,873,469	+				-0.9
4,873,527	+				-0.2
4,873,527	+				+0.8
4,873,530	-				-0.0
4,873,530	-				-0.8
4,873,867	+		Psyr_4088	0.26	-0.0
4,873,976	+		Psyr_4088	0.38	+1.3
4,874,081	+		Psyr_4088	0.50	+0.9
4,874,081	+		Psyr_4088	0.50	+0.5
4,874,082	-		Psyr_4088	0.50	+0.8
4,874,082	-		Psyr_4088	0.50	+0.1
4,874,374	+		Psyr_4088	0.81	-0.9
4,874,374	+		Psyr_4088	0.81	-0.5
4,874,375	-		Psyr_4088	0.82	-0.5
4,874,375	-		Psyr_4088	0.82	+0.8
4,874,375	-		Psyr_4088	0.82	-0.7
4,874,375	-		Psyr_4088	0.82	+2.1
4,874,386	+		Psyr_4088	0.83	-0.2
4,874,386	+		Psyr_4088	0.83	+0.1
4,874,386	+		Psyr_4088	0.83	+0.3
4,874,425	+		Psyr_4088	0.87	+0.1