Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3936

Experiment: KB with capsaicin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3934 and Psyr_3935 are separated by 124 nucleotidesPsyr_3935 and Psyr_3936 are separated by 10 nucleotidesPsyr_3936 and Psyr_3937 are separated by 27 nucleotidesPsyr_3937 and Psyr_3938 are separated by 76 nucleotides Psyr_3934: Psyr_3934 - Short-chain dehydrogenase/reductase SDR, at 4,679,341 to 4,680,090 _3934 Psyr_3935: Psyr_3935 - Short-chain dehydrogenase/reductase SDR, at 4,680,215 to 4,680,976 _3935 Psyr_3936: Psyr_3936 - General substrate transporter:Major facilitator superfamily, at 4,680,987 to 4,682,327 _3936 Psyr_3937: Psyr_3937 - Polysaccharide deacetylase, at 4,682,355 to 4,683,236 _3937 Psyr_3938: Psyr_3938 - Amidase, at 4,683,313 to 4,684,686 _3938 Position (kb) 4680 4681 4682 4683Strain fitness (log2 ratio) -2 -1 0 1 2at 4680.015 kb on - strand, within Psyr_3934at 4680.520 kb on - strand, within Psyr_3935at 4680.520 kb on - strand, within Psyr_3935at 4680.543 kb on + strand, within Psyr_3935at 4680.543 kb on + strand, within Psyr_3935at 4680.543 kb on + strand, within Psyr_3935at 4680.543 kb on + strand, within Psyr_3935at 4680.544 kb on - strand, within Psyr_3935at 4680.544 kb on - strand, within Psyr_3935at 4680.873 kb on + strand, within Psyr_3935at 4680.968 kb on - strandat 4681.066 kb on + strandat 4681.067 kb on - strandat 4681.067 kb on - strandat 4681.067 kb on - strandat 4681.261 kb on + strand, within Psyr_3936at 4681.261 kb on + strand, within Psyr_3936at 4681.262 kb on - strand, within Psyr_3936at 4681.481 kb on + strand, within Psyr_3936at 4681.855 kb on + strand, within Psyr_3936at 4681.855 kb on + strand, within Psyr_3936at 4681.855 kb on + strand, within Psyr_3936at 4681.903 kb on + strand, within Psyr_3936at 4681.904 kb on - strand, within Psyr_3936at 4681.904 kb on - strand, within Psyr_3936at 4681.918 kb on + strand, within Psyr_3936at 4681.918 kb on + strand, within Psyr_3936at 4681.919 kb on - strand, within Psyr_3936at 4681.919 kb on - strand, within Psyr_3936at 4681.919 kb on - strand, within Psyr_3936at 4681.919 kb on - strand, within Psyr_3936at 4682.080 kb on - strand, within Psyr_3936at 4682.080 kb on - strand, within Psyr_3936at 4682.215 kb on + strandat 4682.215 kb on + strandat 4682.215 kb on + strandat 4682.215 kb on + strandat 4682.215 kb on + strandat 4682.215 kb on + strandat 4682.215 kb on + strandat 4682.215 kb on + strandat 4682.216 kb on - strandat 4682.216 kb on - strandat 4682.216 kb on - strandat 4682.216 kb on - strandat 4682.217 kb on + strandat 4682.217 kb on + strandat 4682.262 kb on + strandat 4682.262 kb on + strandat 4682.262 kb on + strandat 4682.262 kb on + strandat 4682.263 kb on - strandat 4682.313 kb on - strandat 4682.313 kb on - strandat 4682.313 kb on - strandat 4682.313 kb on - strandat 4682.317 kb on + strandat 4682.317 kb on + strandat 4682.318 kb on - strandat 4682.648 kb on - strand, within Psyr_3937at 4682.764 kb on + strand, within Psyr_3937at 4682.764 kb on + strand, within Psyr_3937at 4682.764 kb on + strand, within Psyr_3937at 4682.764 kb on + strand, within Psyr_3937at 4682.764 kb on + strand, within Psyr_3937at 4682.764 kb on + strand, within Psyr_3937at 4682.764 kb on + strand, within Psyr_3937at 4682.764 kb on + strand, within Psyr_3937at 4682.764 kb on + strand, within Psyr_3937at 4682.765 kb on - strand, within Psyr_3937at 4682.765 kb on - strand, within Psyr_3937at 4682.765 kb on - strand, within Psyr_3937at 4682.767 kb on + strand, within Psyr_3937at 4682.768 kb on - strand, within Psyr_3937at 4682.803 kb on + strand, within Psyr_3937at 4682.803 kb on + strand, within Psyr_3937at 4682.803 kb on + strand, within Psyr_3937at 4682.804 kb on - strand, within Psyr_3937at 4682.804 kb on - strand, within Psyr_3937at 4682.804 kb on - strand, within Psyr_3937at 4682.804 kb on - strand, within Psyr_3937at 4682.804 kb on - strand, within Psyr_3937at 4682.804 kb on - strand, within Psyr_3937at 4682.804 kb on - strand, within Psyr_3937at 4682.869 kb on + strand, within Psyr_3937at 4682.870 kb on - strand, within Psyr_3937at 4682.870 kb on - strand, within Psyr_3937at 4682.974 kb on + strand, within Psyr_3937at 4682.974 kb on + strand, within Psyr_3937at 4683.065 kb on + strand, within Psyr_3937at 4683.065 kb on + strand, within Psyr_3937at 4683.065 kb on + strand, within Psyr_3937at 4683.065 kb on + strand, within Psyr_3937at 4683.066 kb on - strand, within Psyr_3937at 4683.080 kb on - strand, within Psyr_3937at 4683.169 kb on + strandat 4683.169 kb on + strandat 4683.170 kb on - strandat 4683.170 kb on - strandat 4683.170 kb on - strandat 4683.325 kb on + strandat 4683.326 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml
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4,680,015 - Psyr_3934 0.90 +0.5
4,680,520 - Psyr_3935 0.40 +0.6
4,680,520 - Psyr_3935 0.40 -1.3
4,680,543 + Psyr_3935 0.43 -2.3
4,680,543 + Psyr_3935 0.43 -0.0
4,680,543 + Psyr_3935 0.43 +0.7
4,680,543 + Psyr_3935 0.43 -0.0
4,680,544 - Psyr_3935 0.43 -2.0
4,680,544 - Psyr_3935 0.43 -0.0
4,680,873 + Psyr_3935 0.86 +1.0
4,680,968 - -0.7
4,681,066 + -0.8
4,681,067 - +0.1
4,681,067 - -0.0
4,681,067 - -1.3
4,681,261 + Psyr_3936 0.20 -0.9
4,681,261 + Psyr_3936 0.20 -2.1
4,681,262 - Psyr_3936 0.21 -0.3
4,681,481 + Psyr_3936 0.37 +0.4
4,681,855 + Psyr_3936 0.65 -0.7
4,681,855 + Psyr_3936 0.65 -0.3
4,681,855 + Psyr_3936 0.65 +0.5
4,681,903 + Psyr_3936 0.68 -0.6
4,681,904 - Psyr_3936 0.68 +2.3
4,681,904 - Psyr_3936 0.68 +0.2
4,681,918 + Psyr_3936 0.69 -0.1
4,681,918 + Psyr_3936 0.69 +0.4
4,681,919 - Psyr_3936 0.70 -1.1
4,681,919 - Psyr_3936 0.70 -0.5
4,681,919 - Psyr_3936 0.70 -0.5
4,681,919 - Psyr_3936 0.70 -0.4
4,682,080 - Psyr_3936 0.82 +1.0
4,682,080 - Psyr_3936 0.82 -0.4
4,682,215 + +0.6
4,682,215 + -1.7
4,682,215 + -1.0
4,682,215 + -1.4
4,682,215 + -0.4
4,682,215 + +1.0
4,682,215 + +0.3
4,682,215 + -1.3
4,682,216 - +0.4
4,682,216 - -0.6
4,682,216 - -0.7
4,682,216 - +0.2
4,682,217 + +0.6
4,682,217 + +0.4
4,682,262 + +1.0
4,682,262 + +0.6
4,682,262 + +0.5
4,682,262 + -0.1
4,682,263 - +0.4
4,682,313 - -1.4
4,682,313 - -0.4
4,682,313 - -0.9
4,682,313 - +0.1
4,682,317 + +0.6
4,682,317 + -0.1
4,682,318 - -0.3
4,682,648 - Psyr_3937 0.33 -0.3
4,682,764 + Psyr_3937 0.46 +1.9
4,682,764 + Psyr_3937 0.46 -0.6
4,682,764 + Psyr_3937 0.46 +0.3
4,682,764 + Psyr_3937 0.46 -0.1
4,682,764 + Psyr_3937 0.46 +0.3
4,682,764 + Psyr_3937 0.46 +0.6
4,682,764 + Psyr_3937 0.46 -0.3
4,682,764 + Psyr_3937 0.46 +0.6
4,682,764 + Psyr_3937 0.46 -0.8
4,682,765 - Psyr_3937 0.46 -0.2
4,682,765 - Psyr_3937 0.46 -0.1
4,682,765 - Psyr_3937 0.46 -0.2
4,682,767 + Psyr_3937 0.47 -0.9
4,682,768 - Psyr_3937 0.47 -1.0
4,682,803 + Psyr_3937 0.51 -0.7
4,682,803 + Psyr_3937 0.51 +0.6
4,682,803 + Psyr_3937 0.51 -0.2
4,682,804 - Psyr_3937 0.51 +0.1
4,682,804 - Psyr_3937 0.51 -0.0
4,682,804 - Psyr_3937 0.51 -0.0
4,682,804 - Psyr_3937 0.51 -2.0
4,682,804 - Psyr_3937 0.51 +0.8
4,682,804 - Psyr_3937 0.51 -0.0
4,682,804 - Psyr_3937 0.51 -0.0
4,682,869 + Psyr_3937 0.58 -0.7
4,682,870 - Psyr_3937 0.58 -0.1
4,682,870 - Psyr_3937 0.58 +0.6
4,682,974 + Psyr_3937 0.70 -0.7
4,682,974 + Psyr_3937 0.70 -0.8
4,683,065 + Psyr_3937 0.80 -0.1
4,683,065 + Psyr_3937 0.80 -0.2
4,683,065 + Psyr_3937 0.80 +1.4
4,683,065 + Psyr_3937 0.80 +0.6
4,683,066 - Psyr_3937 0.81 +0.1
4,683,080 - Psyr_3937 0.82 +0.5
4,683,169 + +0.8
4,683,169 + +1.2
4,683,170 - -0.8
4,683,170 - -0.4
4,683,170 - +1.3
4,683,325 + -0.2
4,683,326 - +0.5

Or see this region's nucleotide sequence