Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3906

Experiment: KB with capsaicin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.125 mg/ml
4,646,723	+		Psyr_3905	0.52	+0.1
4,646,723	+		Psyr_3905	0.52	-1.2
4,646,723	+		Psyr_3905	0.52	-1.0
4,646,723	+		Psyr_3905	0.52	-0.2
4,646,724	-		Psyr_3905	0.52	-1.3
4,646,829	-		Psyr_3905	0.59	-2.2
4,646,957	+		Psyr_3905	0.68	-0.2
4,646,957	+		Psyr_3905	0.68	-0.0
4,646,957	+		Psyr_3905	0.68	+1.0
4,646,993	+		Psyr_3905	0.70	-1.0
4,646,993	+		Psyr_3905	0.70	-2.2
4,646,994	-		Psyr_3905	0.70	-2.3
4,647,245	-		Psyr_3905	0.87	-3.0
4,647,377	+				+0.2
4,647,454	+				-1.5
4,647,454	+				-0.2
4,647,454	+				-0.2
4,647,455	-				+0.6
4,647,455	-				+0.3
4,647,455	-				-1.5
4,647,596	+				+0.2
4,647,597	-				-1.3
4,647,714	-		Psyr_3906	0.23	-1.3
4,647,957	+		Psyr_3906	0.55	+1.3
4,647,957	+		Psyr_3906	0.55	-1.2
4,647,958	-		Psyr_3906	0.55	-2.0
4,648,424	+				+1.2
4,648,424	+				-1.6
4,648,424	+				-1.6
4,648,424	+				+0.7
4,648,424	+				+1.1
4,648,424	+				-1.0
4,648,424	+				-0.6
4,648,424	+				+0.3
4,648,424	+				-0.1
4,648,424	+				+0.2
4,648,424	+				+0.7
4,648,424	+				+1.6
4,648,424	+				-0.2
4,648,424	+				+0.6
4,648,424	+				-2.8
4,648,424	+				-0.8
4,648,424	+				-0.0
4,648,424	+				-0.3
4,648,424	+				-1.5
4,648,424	+				+1.3
4,648,424	+				-1.8
4,648,424	+				-0.1
4,648,424	+				-2.5
4,648,424	+				-0.8
4,648,425	-				+1.0
4,648,425	-				+0.1
4,648,425	-				+0.6
4,648,425	-				-0.9
4,648,425	-				+0.2
4,648,425	-				+0.7
4,648,425	-				+1.4
4,648,425	-				+0.3
4,648,425	-				-1.2
4,648,425	-				+0.6
4,648,425	-				-0.4
4,648,425	-				-0.4
4,648,425	-				+2.4
4,648,425	-				+1.1
4,648,425	-				-1.0
4,648,425	-				-0.4
4,648,425	-				+0.7
4,648,425	-				+0.2
4,648,425	-				-1.8
4,648,425	-				+0.1
4,648,425	-				+0.3
4,648,425	-				-0.4
4,648,425	-				+0.3
4,648,425	-				+0.1
4,648,425	-				+0.6
4,648,425	-				-0.5
4,648,425	-				-0.3
4,648,425	-				+0.4
4,648,425	-				-0.8
4,648,425	-				-0.0
4,648,428	+				-0.3
4,648,428	+				-2.1
4,648,428	+				+2.6
4,648,428	+				-0.0
4,648,428	+				-0.6
4,648,429	-				-2.6
4,648,429	-				-0.2
4,648,429	-				-0.4
4,648,429	-				-0.6
4,648,429	-				+0.5
4,648,429	-				+1.5
4,648,429	-				-0.5
4,648,429	-				+0.8
4,648,429	-				-0.6
4,648,429	-				+0.2
4,648,429	-				+0.2
4,648,429	-				-0.2
4,648,429	-				-0.4
4,648,498	+				-0.2
4,648,499	-				-0.3
4,648,509	-				-2.3
4,648,948	+				+1.4
4,648,948	+				+0.5
4,648,948	+				-0.6
4,648,968	-				-0.2
4,649,095	+				-0.6
4,649,096	-				+1.0
4,649,107	+				-0.6
4,649,108	-				-3.3
4,649,108	-				-0.6
4,649,108	-				+2.0
4,649,161	+				-0.4
4,649,161	+				-1.0
4,649,162	-				-1.2
4,649,162	-				-0.0
4,649,162	-				-3.7
4,649,162	-				+1.0
4,649,162	-				-2.8
4,649,162	-				-1.0
4,649,191	+				-0.6