Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3662

Experiment: KB with capsaicin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3661 and Psyr_3662 overlap by 8 nucleotidesPsyr_3662 and Psyr_3663 are separated by 20 nucleotides Psyr_3661: Psyr_3661 - Fumarate hydratase, class II, at 4,347,509 to 4,348,903 _3661 Psyr_3662: Psyr_3662 - NAD(P)H dehydrogenase (quinone), at 4,348,896 to 4,349,510 _3662 Psyr_3663: Psyr_3663 - Protein of unknown function DUF6, at 4,349,531 to 4,350,490 _3663 Position (kb) 4348 4349 4350Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4348.583 kb on + strand, within Psyr_3661at 4348.583 kb on + strand, within Psyr_3661at 4348.583 kb on + strand, within Psyr_3661at 4348.584 kb on - strand, within Psyr_3661at 4348.584 kb on - strand, within Psyr_3661at 4348.788 kb on - strandat 4348.895 kb on - strandat 4348.960 kb on - strand, within Psyr_3662at 4349.341 kb on - strand, within Psyr_3662at 4349.355 kb on + strand, within Psyr_3662at 4349.384 kb on - strand, within Psyr_3662at 4349.393 kb on - strand, within Psyr_3662at 4349.480 kb on + strandat 4349.481 kb on - strandat 4349.667 kb on + strand, within Psyr_3663at 4349.667 kb on + strand, within Psyr_3663at 4349.667 kb on + strand, within Psyr_3663at 4349.668 kb on - strand, within Psyr_3663at 4349.668 kb on - strand, within Psyr_3663at 4349.788 kb on - strand, within Psyr_3663at 4349.901 kb on + strand, within Psyr_3663at 4349.901 kb on + strand, within Psyr_3663at 4349.901 kb on + strand, within Psyr_3663at 4349.901 kb on + strand, within Psyr_3663at 4349.902 kb on - strand, within Psyr_3663at 4349.902 kb on - strand, within Psyr_3663at 4349.902 kb on - strand, within Psyr_3663at 4349.902 kb on - strand, within Psyr_3663at 4349.915 kb on + strand, within Psyr_3663at 4349.933 kb on + strand, within Psyr_3663at 4349.934 kb on - strand, within Psyr_3663at 4349.934 kb on - strand, within Psyr_3663at 4349.965 kb on - strand, within Psyr_3663at 4350.015 kb on + strand, within Psyr_3663at 4350.015 kb on + strand, within Psyr_3663at 4350.016 kb on - strand, within Psyr_3663at 4350.016 kb on - strand, within Psyr_3663at 4350.084 kb on - strand, within Psyr_3663at 4350.219 kb on + strand, within Psyr_3663at 4350.219 kb on + strand, within Psyr_3663at 4350.219 kb on + strand, within Psyr_3663at 4350.220 kb on - strand, within Psyr_3663at 4350.220 kb on - strand, within Psyr_3663at 4350.220 kb on - strand, within Psyr_3663at 4350.220 kb on - strand, within Psyr_3663at 4350.228 kb on + strand, within Psyr_3663at 4350.228 kb on + strand, within Psyr_3663at 4350.228 kb on + strand, within Psyr_3663at 4350.228 kb on + strand, within Psyr_3663at 4350.228 kb on + strand, within Psyr_3663at 4350.228 kb on + strand, within Psyr_3663at 4350.228 kb on + strand, within Psyr_3663at 4350.228 kb on + strand, within Psyr_3663at 4350.228 kb on + strand, within Psyr_3663at 4350.228 kb on + strand, within Psyr_3663at 4350.228 kb on + strand, within Psyr_3663at 4350.228 kb on + strand, within Psyr_3663at 4350.228 kb on + strand, within Psyr_3663at 4350.228 kb on + strand, within Psyr_3663at 4350.228 kb on + strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.379 kb on + strand, within Psyr_3663at 4350.462 kb on + strandat 4350.463 kb on - strandat 4350.509 kb on + strandat 4350.509 kb on + strandat 4350.510 kb on - strandat 4350.510 kb on - strandat 4350.510 kb on - strandat 4350.510 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml
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4,348,583 + Psyr_3661 0.77 -0.4
4,348,583 + Psyr_3661 0.77 -0.1
4,348,583 + Psyr_3661 0.77 -0.0
4,348,584 - Psyr_3661 0.77 -0.2
4,348,584 - Psyr_3661 0.77 -0.3
4,348,788 - -0.2
4,348,895 - -0.1
4,348,960 - Psyr_3662 0.10 -0.5
4,349,341 - Psyr_3662 0.72 +1.0
4,349,355 + Psyr_3662 0.75 +0.3
4,349,384 - Psyr_3662 0.79 +2.5
4,349,393 - Psyr_3662 0.81 +0.6
4,349,480 + -0.3
4,349,481 - +1.9
4,349,667 + Psyr_3663 0.14 +1.3
4,349,667 + Psyr_3663 0.14 -0.4
4,349,667 + Psyr_3663 0.14 -0.3
4,349,668 - Psyr_3663 0.14 -1.4
4,349,668 - Psyr_3663 0.14 +0.5
4,349,788 - Psyr_3663 0.27 +0.9
4,349,901 + Psyr_3663 0.39 -0.4
4,349,901 + Psyr_3663 0.39 -1.4
4,349,901 + Psyr_3663 0.39 -0.2
4,349,901 + Psyr_3663 0.39 +0.2
4,349,902 - Psyr_3663 0.39 -2.8
4,349,902 - Psyr_3663 0.39 -0.9
4,349,902 - Psyr_3663 0.39 -1.4
4,349,902 - Psyr_3663 0.39 +0.0
4,349,915 + Psyr_3663 0.40 +0.6
4,349,933 + Psyr_3663 0.42 -1.1
4,349,934 - Psyr_3663 0.42 +0.3
4,349,934 - Psyr_3663 0.42 +0.0
4,349,965 - Psyr_3663 0.45 +1.3
4,350,015 + Psyr_3663 0.50 -0.3
4,350,015 + Psyr_3663 0.50 +0.1
4,350,016 - Psyr_3663 0.51 +0.9
4,350,016 - Psyr_3663 0.51 +0.9
4,350,084 - Psyr_3663 0.58 +0.3
4,350,219 + Psyr_3663 0.72 -0.4
4,350,219 + Psyr_3663 0.72 -1.1
4,350,219 + Psyr_3663 0.72 -2.1
4,350,220 - Psyr_3663 0.72 +0.3
4,350,220 - Psyr_3663 0.72 -0.8
4,350,220 - Psyr_3663 0.72 -0.0
4,350,220 - Psyr_3663 0.72 -0.9
4,350,228 + Psyr_3663 0.73 -0.3
4,350,228 + Psyr_3663 0.73 +0.6
4,350,228 + Psyr_3663 0.73 +0.9
4,350,228 + Psyr_3663 0.73 -0.5
4,350,228 + Psyr_3663 0.73 -0.5
4,350,228 + Psyr_3663 0.73 -1.2
4,350,228 + Psyr_3663 0.73 +0.3
4,350,228 + Psyr_3663 0.73 +1.7
4,350,228 + Psyr_3663 0.73 +0.1
4,350,228 + Psyr_3663 0.73 -0.2
4,350,228 + Psyr_3663 0.73 -0.2
4,350,228 + Psyr_3663 0.73 +0.2
4,350,228 + Psyr_3663 0.73 +0.6
4,350,228 + Psyr_3663 0.73 -0.5
4,350,228 + Psyr_3663 0.73 +0.5
4,350,229 - Psyr_3663 0.73 +0.1
4,350,229 - Psyr_3663 0.73 +0.2
4,350,229 - Psyr_3663 0.73 +0.7
4,350,229 - Psyr_3663 0.73 +1.5
4,350,229 - Psyr_3663 0.73 +0.9
4,350,229 - Psyr_3663 0.73 -0.2
4,350,229 - Psyr_3663 0.73 -0.2
4,350,229 - Psyr_3663 0.73 -0.1
4,350,229 - Psyr_3663 0.73 +0.2
4,350,229 - Psyr_3663 0.73 -0.3
4,350,229 - Psyr_3663 0.73 +0.1
4,350,229 - Psyr_3663 0.73 -0.0
4,350,229 - Psyr_3663 0.73 +0.9
4,350,229 - Psyr_3663 0.73 +0.5
4,350,229 - Psyr_3663 0.73 +0.2
4,350,229 - Psyr_3663 0.73 -0.2
4,350,229 - Psyr_3663 0.73 -0.3
4,350,229 - Psyr_3663 0.73 -1.0
4,350,229 - Psyr_3663 0.73 -1.2
4,350,379 + Psyr_3663 0.88 -0.2
4,350,462 + -0.1
4,350,463 - -0.7
4,350,509 + -0.3
4,350,509 + +1.4
4,350,510 - -0.5
4,350,510 - +1.3
4,350,510 - -0.7
4,350,510 - -0.4

Or see this region's nucleotide sequence