Experiment: KB with capsaicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3650 and Psyr_3651 are separated by 3 nucleotides Psyr_3651 and Psyr_3652 are separated by 12 nucleotides Psyr_3652 and Psyr_3653 are separated by 207 nucleotides
Psyr_3650: Psyr_3650 - 3-demethylubiquinone-9 3-methyltransferase, at 4,336,233 to 4,336,931
_3650
Psyr_3651: Psyr_3651 - 2-phosphoglycolate phosphatase, prokaryotic:HAD-superfamily hydrolase, subfamily IA, variant 3:HAD-superfamily hydrolase, subfamily IA, variant 1, at 4,336,935 to 4,337,606
_3651
Psyr_3652: Psyr_3652 - Short-chain dehydrogenase/reductase SDR, at 4,337,619 to 4,338,359
_3652
Psyr_3653: Psyr_3653 - GGDEF domain protein, at 4,338,567 to 4,339,493
_3653
Position (kb) 4337
4338
4339 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4337.502 kb on + strand, within Psyr_3651 at 4337.616 kb on + strand at 4337.616 kb on + strand at 4337.616 kb on + strand at 4337.616 kb on + strand at 4337.616 kb on + strand at 4337.616 kb on + strand at 4337.617 kb on - strand at 4337.617 kb on - strand at 4337.617 kb on - strand at 4337.617 kb on - strand at 4337.617 kb on - strand at 4337.617 kb on - strand at 4337.715 kb on + strand, within Psyr_3652 at 4337.821 kb on + strand, within Psyr_3652 at 4337.857 kb on - strand, within Psyr_3652 at 4337.899 kb on + strand, within Psyr_3652 at 4337.916 kb on - strand, within Psyr_3652 at 4337.939 kb on + strand, within Psyr_3652 at 4338.082 kb on + strand, within Psyr_3652 at 4338.082 kb on + strand, within Psyr_3652 at 4338.083 kb on - strand, within Psyr_3652 at 4338.083 kb on - strand, within Psyr_3652 at 4338.083 kb on - strand, within Psyr_3652 at 4338.083 kb on - strand, within Psyr_3652 at 4338.083 kb on - strand, within Psyr_3652 at 4338.083 kb on - strand, within Psyr_3652 at 4338.298 kb on - strand at 4338.417 kb on - strand at 4338.468 kb on - strand at 4338.481 kb on + strand at 4338.546 kb on + strand at 4338.546 kb on + strand at 4338.546 kb on + strand at 4338.546 kb on + strand at 4338.547 kb on - strand at 4338.547 kb on - strand at 4338.547 kb on - strand at 4338.547 kb on - strand at 4338.632 kb on + strand at 4338.684 kb on + strand, within Psyr_3653 at 4338.754 kb on + strand, within Psyr_3653 at 4338.754 kb on + strand, within Psyr_3653 at 4338.754 kb on + strand, within Psyr_3653 at 4338.755 kb on - strand, within Psyr_3653 at 4338.755 kb on - strand, within Psyr_3653 at 4338.755 kb on - strand, within Psyr_3653 at 4338.755 kb on - strand, within Psyr_3653 at 4338.755 kb on - strand, within Psyr_3653 at 4338.755 kb on - strand, within Psyr_3653 at 4338.755 kb on - strand, within Psyr_3653 at 4338.786 kb on + strand, within Psyr_3653 at 4338.786 kb on + strand, within Psyr_3653 at 4338.786 kb on + strand, within Psyr_3653 at 4338.787 kb on - strand, within Psyr_3653 at 4338.960 kb on + strand, within Psyr_3653 at 4339.152 kb on + strand, within Psyr_3653 at 4339.152 kb on + strand, within Psyr_3653 at 4339.152 kb on + strand, within Psyr_3653
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml remove 4,337,502 + Psyr_3651 0.84 -1.9 4,337,616 + +0.3 4,337,616 + +0.9 4,337,616 + -0.0 4,337,616 + -1.1 4,337,616 + -0.7 4,337,616 + +0.4 4,337,617 - -0.6 4,337,617 - +0.0 4,337,617 - +0.5 4,337,617 - -0.1 4,337,617 - +0.7 4,337,617 - -0.0 4,337,715 + Psyr_3652 0.13 +0.1 4,337,821 + Psyr_3652 0.27 -0.8 4,337,857 - Psyr_3652 0.32 -0.1 4,337,899 + Psyr_3652 0.38 -1.9 4,337,916 - Psyr_3652 0.40 -1.6 4,337,939 + Psyr_3652 0.43 -0.8 4,338,082 + Psyr_3652 0.62 +0.3 4,338,082 + Psyr_3652 0.62 +0.1 4,338,083 - Psyr_3652 0.63 -0.8 4,338,083 - Psyr_3652 0.63 +0.6 4,338,083 - Psyr_3652 0.63 -0.3 4,338,083 - Psyr_3652 0.63 -0.4 4,338,083 - Psyr_3652 0.63 -0.9 4,338,083 - Psyr_3652 0.63 -1.7 4,338,298 - -0.1 4,338,417 - +1.6 4,338,468 - +0.3 4,338,481 + -0.6 4,338,546 + -0.2 4,338,546 + +0.5 4,338,546 + +1.1 4,338,546 + +1.1 4,338,547 - +1.3 4,338,547 - -1.1 4,338,547 - -0.3 4,338,547 - -0.7 4,338,632 + +0.4 4,338,684 + Psyr_3653 0.13 -0.2 4,338,754 + Psyr_3653 0.20 -0.3 4,338,754 + Psyr_3653 0.20 +1.5 4,338,754 + Psyr_3653 0.20 +0.3 4,338,755 - Psyr_3653 0.20 -0.5 4,338,755 - Psyr_3653 0.20 -0.3 4,338,755 - Psyr_3653 0.20 -0.3 4,338,755 - Psyr_3653 0.20 +0.5 4,338,755 - Psyr_3653 0.20 -0.3 4,338,755 - Psyr_3653 0.20 -0.3 4,338,755 - Psyr_3653 0.20 -0.7 4,338,786 + Psyr_3653 0.24 -0.1 4,338,786 + Psyr_3653 0.24 +0.8 4,338,786 + Psyr_3653 0.24 -0.5 4,338,787 - Psyr_3653 0.24 +0.2 4,338,960 + Psyr_3653 0.42 +1.1 4,339,152 + Psyr_3653 0.63 +0.9 4,339,152 + Psyr_3653 0.63 +1.6 4,339,152 + Psyr_3653 0.63 +2.4
Or see this region's nucleotide sequence