Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3323

Experiment: KB with capsaicin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.125 mg/ml
3,973,628	+		Psyr_3322	0.31	+0.2
3,973,629	-		Psyr_3322	0.31	+1.1
3,973,770	+		Psyr_3322	0.43	+0.1
3,973,771	-		Psyr_3322	0.43	+2.2
3,973,801	+		Psyr_3322	0.45	-0.9
3,973,802	-		Psyr_3322	0.45	-0.7
3,973,802	-		Psyr_3322	0.45	+0.3
3,973,802	-		Psyr_3322	0.45	-1.3
3,973,803	+		Psyr_3322	0.45	-0.1
3,973,803	+		Psyr_3322	0.45	-1.0
3,973,803	+		Psyr_3322	0.45	+0.0
3,973,803	+		Psyr_3322	0.45	-0.2
3,973,803	+		Psyr_3322	0.45	-0.8
3,973,804	-		Psyr_3322	0.45	-0.4
3,973,804	-		Psyr_3322	0.45	-1.1
3,973,804	-		Psyr_3322	0.45	+0.2
3,974,055	+		Psyr_3322	0.66	+1.0
3,974,055	+		Psyr_3322	0.66	+0.3
3,974,055	+		Psyr_3322	0.66	+1.3
3,974,056	-		Psyr_3322	0.66	-1.8
3,974,056	-		Psyr_3322	0.66	-0.1
3,974,067	+		Psyr_3322	0.67	+0.8
3,974,067	+		Psyr_3322	0.67	-0.1
3,974,067	+		Psyr_3322	0.67	-0.5
3,974,067	+		Psyr_3322	0.67	+0.5
3,974,067	+		Psyr_3322	0.67	-0.2
3,974,067	+		Psyr_3322	0.67	-0.9
3,974,068	-		Psyr_3322	0.67	-0.2
3,974,068	-		Psyr_3322	0.67	+1.4
3,974,068	-		Psyr_3322	0.67	-0.8
3,974,068	-		Psyr_3322	0.67	+0.3
3,974,068	-		Psyr_3322	0.67	+1.8
3,974,256	+		Psyr_3322	0.82	+1.0
3,974,505	-				-0.6
3,974,551	-				-1.6
3,974,554	+				-0.2
3,974,554	+				+0.1
3,974,555	-				+0.2
3,974,705	+		Psyr_3323	0.11	-0.5
3,974,705	+		Psyr_3323	0.11	-0.4
3,974,705	+		Psyr_3323	0.11	+0.4
3,974,706	-		Psyr_3323	0.11	+0.4
3,974,706	-		Psyr_3323	0.11	-0.6
3,974,706	-		Psyr_3323	0.11	-0.5
3,974,706	-		Psyr_3323	0.11	+0.0
3,974,913	-		Psyr_3323	0.30	-0.8
3,975,269	+		Psyr_3323	0.62	-0.2
3,975,653	+				+0.3
3,975,729	+				-0.7
3,975,729	+				-1.1
3,975,729	+				+0.4
3,975,730	-				+0.5
3,975,730	-				-0.8
3,975,763	+				-1.7
3,975,763	+				-0.9
3,975,763	+				+1.4
3,975,763	+				-0.4
3,975,763	+				-0.4
3,975,763	+				+0.0
3,975,763	+				-1.5
3,975,764	-				-1.6
3,975,767	+				+0.9
3,975,767	+				+0.6
3,975,767	+				-0.1
3,975,767	+				-0.8
3,975,767	+				+0.6
3,975,767	+				-0.3
3,975,768	-				-0.8
3,975,768	-				-0.1
3,975,768	-				-0.7
3,975,825	+				+1.6
3,975,872	+				-1.6
3,975,873	-				-0.3
3,975,873	-				+0.6
3,975,873	-				-0.6
3,976,009	-		Psyr_3324	0.22	-1.2
3,976,015	+		Psyr_3324	0.23	-0.0
3,976,015	+		Psyr_3324	0.23	+0.8
3,976,015	+		Psyr_3324	0.23	+0.4
3,976,015	+		Psyr_3324	0.23	-1.2
3,976,015	+		Psyr_3324	0.23	-0.1
3,976,016	-		Psyr_3324	0.23	-0.6
3,976,016	-		Psyr_3324	0.23	-1.6
3,976,016	-		Psyr_3324	0.23	-0.7
3,976,016	-		Psyr_3324	0.23	+2.8
3,976,016	-		Psyr_3324	0.23	-2.6
3,976,016	-		Psyr_3324	0.23	-0.5
3,976,479	-				+0.4