Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3236

Experiment: KB with capsaicin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3234 and Psyr_3235 are separated by 124 nucleotidesPsyr_3235 and Psyr_3236 are separated by 88 nucleotidesPsyr_3236 and Psyr_3237 are separated by 129 nucleotidesPsyr_3237 and Psyr_3238 are separated by 42 nucleotides Psyr_3234: Psyr_3234 - Lysine exporter protein (LYSE/YGGA), at 3,873,504 to 3,874,112 _3234 Psyr_3235: Psyr_3235 - lipoprotein, putative, at 3,874,237 to 3,874,518 _3235 Psyr_3236: Psyr_3236 - transcriptional regulator, LysR family, at 3,874,607 to 3,875,497 _3236 Psyr_3237: Psyr_3237 - 3-oxoacid CoA-transferase, at 3,875,627 to 3,876,328 _3237 Psyr_3238: Psyr_3238 - 3-oxoacid CoA-transferase, at 3,876,371 to 3,877,027 _3238 Position (kb) 3874 3875 3876Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3873.685 kb on + strand, within Psyr_3234at 3873.686 kb on - strand, within Psyr_3234at 3873.691 kb on + strand, within Psyr_3234at 3873.692 kb on - strand, within Psyr_3234at 3873.710 kb on - strand, within Psyr_3234at 3873.710 kb on - strand, within Psyr_3234at 3873.710 kb on - strand, within Psyr_3234at 3873.710 kb on - strand, within Psyr_3234at 3873.853 kb on + strand, within Psyr_3234at 3873.862 kb on + strand, within Psyr_3234at 3873.863 kb on - strand, within Psyr_3234at 3873.877 kb on + strand, within Psyr_3234at 3873.891 kb on - strand, within Psyr_3234at 3873.892 kb on + strand, within Psyr_3234at 3873.892 kb on + strand, within Psyr_3234at 3873.892 kb on + strand, within Psyr_3234at 3873.893 kb on - strand, within Psyr_3234at 3874.052 kb on + strandat 3874.052 kb on + strandat 3874.140 kb on + strandat 3874.140 kb on + strandat 3874.141 kb on - strandat 3874.239 kb on - strandat 3874.356 kb on - strand, within Psyr_3235at 3874.509 kb on + strandat 3874.509 kb on + strandat 3874.510 kb on - strandat 3874.510 kb on - strandat 3874.510 kb on - strandat 3874.510 kb on - strandat 3874.510 kb on - strandat 3874.898 kb on + strand, within Psyr_3236at 3874.898 kb on + strand, within Psyr_3236at 3874.899 kb on - strand, within Psyr_3236at 3875.016 kb on + strand, within Psyr_3236at 3875.016 kb on + strand, within Psyr_3236at 3875.016 kb on + strand, within Psyr_3236at 3875.016 kb on + strand, within Psyr_3236at 3875.016 kb on + strand, within Psyr_3236at 3875.017 kb on - strand, within Psyr_3236at 3875.017 kb on - strand, within Psyr_3236at 3875.017 kb on - strand, within Psyr_3236at 3875.017 kb on - strand, within Psyr_3236at 3875.017 kb on - strand, within Psyr_3236at 3875.239 kb on + strand, within Psyr_3236at 3875.240 kb on - strand, within Psyr_3236at 3875.240 kb on - strand, within Psyr_3236at 3875.454 kb on + strandat 3875.498 kb on - strandat 3875.499 kb on + strandat 3875.609 kb on + strandat 3875.609 kb on + strandat 3875.609 kb on + strandat 3875.609 kb on + strandat 3875.610 kb on - strandat 3875.610 kb on - strandat 3875.611 kb on + strandat 3875.611 kb on + strandat 3875.611 kb on + strandat 3875.611 kb on + strandat 3875.611 kb on + strandat 3875.612 kb on - strandat 3875.612 kb on - strandat 3875.612 kb on - strandat 3875.612 kb on - strandat 3875.612 kb on - strandat 3875.612 kb on - strandat 3875.612 kb on - strandat 3875.612 kb on - strandat 3875.612 kb on - strandat 3875.657 kb on + strandat 3875.658 kb on - strandat 3875.658 kb on - strandat 3875.865 kb on - strand, within Psyr_3237at 3875.987 kb on + strand, within Psyr_3237at 3875.987 kb on + strand, within Psyr_3237at 3875.988 kb on - strand, within Psyr_3237at 3875.988 kb on - strand, within Psyr_3237at 3875.988 kb on - strand, within Psyr_3237at 3875.988 kb on - strand, within Psyr_3237at 3876.134 kb on + strand, within Psyr_3237at 3876.134 kb on + strand, within Psyr_3237at 3876.135 kb on - strand, within Psyr_3237at 3876.135 kb on - strand, within Psyr_3237at 3876.135 kb on - strand, within Psyr_3237at 3876.143 kb on - strand, within Psyr_3237at 3876.260 kb on + strandat 3876.260 kb on + strandat 3876.260 kb on + strandat 3876.261 kb on - strandat 3876.261 kb on - strandat 3876.261 kb on - strandat 3876.261 kb on - strandat 3876.261 kb on - strandat 3876.261 kb on - strandat 3876.276 kb on + strandat 3876.277 kb on - strandat 3876.346 kb on + strandat 3876.432 kb on - strandat 3876.432 kb on - strandat 3876.432 kb on - strandat 3876.432 kb on - strandat 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.477 kb on + strand, within Psyr_3238at 3876.477 kb on + strand, within Psyr_3238at 3876.478 kb on - strand, within Psyr_3238

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml
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3,873,685 + Psyr_3234 0.30 -0.0
3,873,686 - Psyr_3234 0.30 -1.1
3,873,691 + Psyr_3234 0.31 -1.1
3,873,692 - Psyr_3234 0.31 +0.1
3,873,710 - Psyr_3234 0.34 +0.5
3,873,710 - Psyr_3234 0.34 -1.3
3,873,710 - Psyr_3234 0.34 +0.3
3,873,710 - Psyr_3234 0.34 -0.3
3,873,853 + Psyr_3234 0.57 +0.8
3,873,862 + Psyr_3234 0.59 -0.3
3,873,863 - Psyr_3234 0.59 +0.7
3,873,877 + Psyr_3234 0.61 +0.5
3,873,891 - Psyr_3234 0.64 +0.2
3,873,892 + Psyr_3234 0.64 -0.7
3,873,892 + Psyr_3234 0.64 +0.7
3,873,892 + Psyr_3234 0.64 +1.0
3,873,893 - Psyr_3234 0.64 +1.1
3,874,052 + +1.5
3,874,052 + +0.0
3,874,140 + -1.6
3,874,140 + -0.8
3,874,141 - +0.7
3,874,239 - +0.9
3,874,356 - Psyr_3235 0.42 +0.2
3,874,509 + +3.5
3,874,509 + +0.8
3,874,510 - -0.4
3,874,510 - -0.1
3,874,510 - -0.0
3,874,510 - -0.3
3,874,510 - +0.2
3,874,898 + Psyr_3236 0.33 -2.1
3,874,898 + Psyr_3236 0.33 +0.3
3,874,899 - Psyr_3236 0.33 +0.7
3,875,016 + Psyr_3236 0.46 +0.7
3,875,016 + Psyr_3236 0.46 +0.9
3,875,016 + Psyr_3236 0.46 +0.7
3,875,016 + Psyr_3236 0.46 +1.4
3,875,016 + Psyr_3236 0.46 -1.6
3,875,017 - Psyr_3236 0.46 +0.9
3,875,017 - Psyr_3236 0.46 +2.7
3,875,017 - Psyr_3236 0.46 +0.7
3,875,017 - Psyr_3236 0.46 -0.2
3,875,017 - Psyr_3236 0.46 -0.4
3,875,239 + Psyr_3236 0.71 +0.7
3,875,240 - Psyr_3236 0.71 +0.3
3,875,240 - Psyr_3236 0.71 +1.2
3,875,454 + +0.7
3,875,498 - +0.6
3,875,499 + +0.7
3,875,609 + +1.3
3,875,609 + +0.8
3,875,609 + +0.7
3,875,609 + +0.6
3,875,610 - -0.3
3,875,610 - +1.0
3,875,611 + +0.3
3,875,611 + +0.2
3,875,611 + -0.3
3,875,611 + +0.7
3,875,611 + -0.3
3,875,612 - -0.9
3,875,612 - -0.6
3,875,612 - +0.3
3,875,612 - +0.5
3,875,612 - +0.1
3,875,612 - -0.8
3,875,612 - -1.6
3,875,612 - +0.3
3,875,612 - +0.7
3,875,657 + +0.7
3,875,658 - -0.4
3,875,658 - -0.6
3,875,865 - Psyr_3237 0.34 -0.7
3,875,987 + Psyr_3237 0.51 +1.4
3,875,987 + Psyr_3237 0.51 +0.1
3,875,988 - Psyr_3237 0.51 -0.4
3,875,988 - Psyr_3237 0.51 +0.5
3,875,988 - Psyr_3237 0.51 -0.2
3,875,988 - Psyr_3237 0.51 +0.6
3,876,134 + Psyr_3237 0.72 +1.8
3,876,134 + Psyr_3237 0.72 +0.0
3,876,135 - Psyr_3237 0.72 -1.9
3,876,135 - Psyr_3237 0.72 +0.9
3,876,135 - Psyr_3237 0.72 -0.4
3,876,143 - Psyr_3237 0.74 +0.6
3,876,260 + +0.4
3,876,260 + -2.6
3,876,260 + -0.8
3,876,261 - +0.1
3,876,261 - +0.8
3,876,261 - -1.8
3,876,261 - -0.0
3,876,261 - -0.1
3,876,261 - +0.7
3,876,276 + -2.3
3,876,277 - -0.9
3,876,346 + -0.1
3,876,432 - -0.0
3,876,432 - +1.7
3,876,432 - -2.1
3,876,432 - +0.1
3,876,473 + Psyr_3238 0.16 -0.3
3,876,473 + Psyr_3238 0.16 +0.4
3,876,473 + Psyr_3238 0.16 -0.1
3,876,473 + Psyr_3238 0.16 -0.6
3,876,473 + Psyr_3238 0.16 +0.1
3,876,473 + Psyr_3238 0.16 +0.5
3,876,473 + Psyr_3238 0.16 +1.6
3,876,473 + Psyr_3238 0.16 -0.4
3,876,473 + Psyr_3238 0.16 -3.1
3,876,473 + Psyr_3238 0.16 -1.7
3,876,473 + Psyr_3238 0.16 +2.0
3,876,473 + Psyr_3238 0.16 -0.3
3,876,473 + Psyr_3238 0.16 +0.7
3,876,473 + Psyr_3238 0.16 +0.1
3,876,473 + Psyr_3238 0.16 -0.8
3,876,474 - Psyr_3238 0.16 -1.6
3,876,474 - Psyr_3238 0.16 +1.0
3,876,474 - Psyr_3238 0.16 -0.0
3,876,474 - Psyr_3238 0.16 +0.7
3,876,474 - Psyr_3238 0.16 +0.7
3,876,474 - Psyr_3238 0.16 +0.1
3,876,474 - Psyr_3238 0.16 -0.7
3,876,474 - Psyr_3238 0.16 +1.3
3,876,474 - Psyr_3238 0.16 -0.5
3,876,474 - Psyr_3238 0.16 -0.4
3,876,474 - Psyr_3238 0.16 +0.0
3,876,474 - Psyr_3238 0.16 +0.5
3,876,474 - Psyr_3238 0.16 +0.2
3,876,474 - Psyr_3238 0.16 +1.1
3,876,474 - Psyr_3238 0.16 -1.0
3,876,474 - Psyr_3238 0.16 -0.3
3,876,474 - Psyr_3238 0.16 -1.1
3,876,477 + Psyr_3238 0.16 +1.7
3,876,477 + Psyr_3238 0.16 -0.0
3,876,478 - Psyr_3238 0.16 +0.7

Or see this region's nucleotide sequence