Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3137

Experiment: KB with capsaicin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.125 mg/ml
3,761,380	-				-0.8
3,761,438	+				+0.8
3,761,517	+				+0.7
3,761,517	+				-0.6
3,761,518	-				+1.2
3,761,568	+				+1.2
3,761,568	+				-0.6
3,761,677	+		Psyr_3136	0.22	-0.8
3,761,677	+		Psyr_3136	0.22	-0.2
3,761,678	-		Psyr_3136	0.22	-1.2
3,761,741	-		Psyr_3136	0.32	-1.1
3,761,741	-		Psyr_3136	0.32	-0.5
3,761,766	+		Psyr_3136	0.36	+1.2
3,761,767	-		Psyr_3136	0.36	-0.9
3,761,778	+		Psyr_3136	0.38	-0.6
3,761,779	-		Psyr_3136	0.38	-1.8
3,761,790	+		Psyr_3136	0.40	+1.0
3,761,790	+		Psyr_3136	0.40	-1.2
3,761,877	+		Psyr_3136	0.54	-0.1
3,761,878	-		Psyr_3136	0.54	-0.9
3,761,885	-		Psyr_3136	0.55	+1.2
3,761,943	+		Psyr_3136	0.65	+0.2
3,761,943	+		Psyr_3136	0.65	+2.2
3,761,943	+		Psyr_3136	0.65	-0.2
3,761,943	+		Psyr_3136	0.65	-0.4
3,761,944	-		Psyr_3136	0.65	-0.3
3,761,944	-		Psyr_3136	0.65	+0.7
3,761,944	-		Psyr_3136	0.65	-1.1
3,761,944	-		Psyr_3136	0.65	-1.7
3,761,944	-		Psyr_3136	0.65	+1.0
3,761,944	-		Psyr_3136	0.65	+0.5
3,761,944	-		Psyr_3136	0.65	+1.6
3,761,991	+		Psyr_3136	0.72	-0.7
3,762,041	+		Psyr_3136	0.80	-0.7
3,762,041	+		Psyr_3136	0.80	+2.0
3,762,076	-		Psyr_3136	0.86	+0.2
3,762,122	+				+1.2
3,762,122	+				-0.8
3,762,123	-				-1.2
3,762,197	+				-0.2
3,762,197	+				-1.1
3,762,198	-				+0.2
3,762,198	-				+1.0
3,762,198	-				+2.2
3,762,254	+				+0.8
3,762,254	+				-0.5
3,762,255	-				+1.4
3,762,255	-				-0.2
3,762,409	-		Psyr_3137	0.17	+0.7
3,762,450	+		Psyr_3137	0.20	+0.7
3,762,450	+		Psyr_3137	0.20	-0.2
3,762,450	+		Psyr_3137	0.20	+0.4
3,762,451	-		Psyr_3137	0.20	+0.2
3,762,451	-		Psyr_3137	0.20	-1.2
3,762,451	-		Psyr_3137	0.20	+1.7
3,762,451	-		Psyr_3137	0.20	-1.2
3,762,451	-		Psyr_3137	0.20	-0.4
3,762,529	+		Psyr_3137	0.26	-1.3
3,762,529	+		Psyr_3137	0.26	-0.0
3,762,529	+		Psyr_3137	0.26	-0.8
3,762,529	+		Psyr_3137	0.26	+0.1
3,762,529	+		Psyr_3137	0.26	-2.0
3,762,529	+		Psyr_3137	0.26	+0.7
3,762,530	-		Psyr_3137	0.26	+0.1
3,762,707	+		Psyr_3137	0.39	-0.2
3,762,708	-		Psyr_3137	0.39	+1.1
3,762,708	-		Psyr_3137	0.39	-0.3
3,762,708	-		Psyr_3137	0.39	+1.1
3,762,708	-		Psyr_3137	0.39	+0.7
3,762,708	-		Psyr_3137	0.39	-0.1
3,762,733	+		Psyr_3137	0.41	-1.3
3,762,734	-		Psyr_3137	0.41	+0.7
3,762,738	-		Psyr_3137	0.41	+0.1
3,762,738	-		Psyr_3137	0.41	+0.9
3,762,801	+		Psyr_3137	0.46	+1.2
3,762,801	+		Psyr_3137	0.46	-2.0
3,762,801	+		Psyr_3137	0.46	-1.2
3,762,801	+		Psyr_3137	0.46	+0.0
3,762,801	+		Psyr_3137	0.46	-0.3
3,762,801	+		Psyr_3137	0.46	-0.8
3,762,801	+		Psyr_3137	0.46	-3.0
3,762,801	+		Psyr_3137	0.46	-0.5
3,762,802	-		Psyr_3137	0.46	+0.7
3,762,802	-		Psyr_3137	0.46	+0.2
3,762,802	-		Psyr_3137	0.46	-0.1
3,762,802	-		Psyr_3137	0.46	-1.9
3,762,802	-		Psyr_3137	0.46	-0.4
3,762,802	-		Psyr_3137	0.46	-0.0
3,762,860	+		Psyr_3137	0.50	-0.9
3,762,860	+		Psyr_3137	0.50	-2.3
3,762,870	+		Psyr_3137	0.51	+0.7
3,762,875	+		Psyr_3137	0.52	-0.8
3,762,875	+		Psyr_3137	0.52	+2.8
3,762,875	+		Psyr_3137	0.52	-0.6
3,762,875	+		Psyr_3137	0.52	+1.1
3,762,875	+		Psyr_3137	0.52	-2.0
3,762,875	+		Psyr_3137	0.52	-0.3
3,762,876	-		Psyr_3137	0.52	-0.1
3,762,876	-		Psyr_3137	0.52	-0.0
3,762,876	-		Psyr_3137	0.52	+2.5
3,762,876	-		Psyr_3137	0.52	+0.7
3,762,876	-		Psyr_3137	0.52	+0.3
3,762,876	-		Psyr_3137	0.52	+1.1
3,762,926	+		Psyr_3137	0.55	+3.5
3,762,956	-		Psyr_3137	0.58	-0.2
3,763,089	+		Psyr_3137	0.67	-0.2
3,763,154	+		Psyr_3137	0.72	-1.3
3,763,155	-		Psyr_3137	0.72	+0.7
3,763,155	-		Psyr_3137	0.72	-1.0
3,763,155	-		Psyr_3137	0.72	+1.0
3,763,271	+		Psyr_3137	0.81	-0.2
3,763,313	+		Psyr_3137	0.84	-0.0
3,763,621	+				-0.4
3,763,621	+				-1.8
3,763,621	+				+0.9
3,763,621	+				-0.1
3,763,622	-				-0.1
3,763,622	-				-2.3
3,763,622	-				-1.9
3,763,670	+				-0.3
3,763,670	+				-1.3
3,763,671	-				+1.0
3,763,671	-				-0.8
3,763,671	-				-0.3
3,763,675	-				+1.1
3,763,675	-				-2.3
3,763,675	-				+1.1
3,763,871	+				+0.3
3,763,871	+				+0.8
3,763,871	+				-1.2
3,763,871	+				+0.1
3,763,871	+				+0.1
3,763,872	-				-0.2
3,763,872	-				-0.8
3,763,874	+				+2.1
3,763,875	-				+0.6
3,764,328	+		Psyr_3138	0.46	+0.7
3,764,329	-		Psyr_3138	0.47	+0.2
3,764,444	+		Psyr_3138	0.56	+0.7
3,764,445	-		Psyr_3138	0.56	-0.6