Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3135

Experiment: KB with capsaicin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.125 mg/ml
3,759,713	+		Psyr_3134	0.28	-0.8
3,759,713	+		Psyr_3134	0.28	+0.6
3,759,714	-		Psyr_3134	0.28	+0.5
3,759,957	+		Psyr_3134	0.47	+0.1
3,760,152	-		Psyr_3134	0.62	+1.2
3,760,152	-		Psyr_3134	0.62	+0.3
3,760,359	+		Psyr_3134	0.78	-0.2
3,760,360	-		Psyr_3134	0.79	+0.3
3,760,642	+				-0.1
3,760,704	+				-0.1
3,760,761	+		Psyr_3135	0.10	-1.3
3,760,762	-		Psyr_3135	0.10	-3.3
3,760,828	-		Psyr_3135	0.19	-0.8
3,760,900	-		Psyr_3135	0.29	-1.0
3,761,380	-				-0.8
3,761,438	+				+0.8
3,761,517	+				+0.7
3,761,517	+				-0.6
3,761,518	-				+1.2
3,761,568	+				+1.2
3,761,568	+				-0.6
3,761,677	+		Psyr_3136	0.22	-0.8
3,761,677	+		Psyr_3136	0.22	-0.2
3,761,678	-		Psyr_3136	0.22	-1.2
3,761,741	-		Psyr_3136	0.32	-1.1
3,761,741	-		Psyr_3136	0.32	-0.5
3,761,766	+		Psyr_3136	0.36	+1.2
3,761,767	-		Psyr_3136	0.36	-0.9
3,761,778	+		Psyr_3136	0.38	-0.6
3,761,779	-		Psyr_3136	0.38	-1.8
3,761,790	+		Psyr_3136	0.40	+1.0
3,761,790	+		Psyr_3136	0.40	-1.2
3,761,877	+		Psyr_3136	0.54	-0.1
3,761,878	-		Psyr_3136	0.54	-0.9
3,761,885	-		Psyr_3136	0.55	+1.2
3,761,943	+		Psyr_3136	0.65	+0.2
3,761,943	+		Psyr_3136	0.65	+2.2
3,761,943	+		Psyr_3136	0.65	-0.2
3,761,943	+		Psyr_3136	0.65	-0.4
3,761,944	-		Psyr_3136	0.65	-0.3
3,761,944	-		Psyr_3136	0.65	+0.7
3,761,944	-		Psyr_3136	0.65	-1.1
3,761,944	-		Psyr_3136	0.65	-1.7
3,761,944	-		Psyr_3136	0.65	+1.0
3,761,944	-		Psyr_3136	0.65	+0.5
3,761,944	-		Psyr_3136	0.65	+1.6
3,761,991	+		Psyr_3136	0.72	-0.7
3,762,041	+		Psyr_3136	0.80	-0.7
3,762,041	+		Psyr_3136	0.80	+2.0
3,762,076	-		Psyr_3136	0.86	+0.2
3,762,122	+				+1.2
3,762,122	+				-0.8
3,762,123	-				-1.2
3,762,197	+				-0.2
3,762,197	+				-1.1
3,762,198	-				+0.2
3,762,198	-				+1.0
3,762,198	-				+2.2
3,762,254	+				+0.8
3,762,254	+				-0.5
3,762,255	-				+1.4
3,762,255	-				-0.2
3,762,409	-		Psyr_3137	0.17	+0.7