Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3129

Experiment: KB with capsaicin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.125 mg/ml
3,751,240	+		Psyr_3128	0.69	+1.5
3,751,240	+		Psyr_3128	0.69	+1.1
3,751,241	-		Psyr_3128	0.69	-0.8
3,751,241	-		Psyr_3128	0.69	-0.6
3,751,241	-		Psyr_3128	0.69	+0.7
3,751,241	-		Psyr_3128	0.69	-0.7
3,751,288	+		Psyr_3128	0.72	-0.4
3,751,512	+		Psyr_3128	0.88	-1.7
3,751,565	-				+3.0
3,751,596	-				+0.9
3,751,606	+				-0.4
3,751,607	-				-1.5
3,751,863	+				-0.3
3,751,863	+				+0.4
3,751,864	-				-1.2
3,751,914	+				-1.5
3,751,914	+				-0.2
3,751,914	+				-0.2
3,751,915	-				+0.3
3,751,915	-				-0.5
3,751,915	-				+0.4
3,751,973	-				-1.0
3,751,973	-				-3.3
3,752,014	+				-0.7
3,752,014	+				-0.0
3,752,014	+				-0.8
3,752,015	-				+0.3
3,752,015	-				+0.3
3,752,015	-				-0.3
3,752,015	-				-0.6
3,752,015	-				+0.7
3,752,015	-				-1.3
3,752,015	-				-1.3
3,752,015	-				-0.9
3,752,015	-				+1.5
3,752,015	-				+0.7
3,752,066	-				+1.3
3,752,068	+				-0.7
3,752,068	+				-1.7
3,752,068	+				+1.7
3,752,069	-				-0.3
3,752,069	-				+0.3
3,752,090	+				-2.1
3,752,091	-				+0.2
3,752,138	-				+1.1
3,752,138	-				-0.0
3,752,194	+				-1.4
3,752,195	-				-0.8
3,752,208	+				-0.2
3,752,208	+				-0.3
3,752,209	-				+4.0
3,752,229	+				+1.5
3,752,230	-				+3.0
3,752,314	-		Psyr_3129	0.16	-0.1
3,752,314	-		Psyr_3129	0.16	+0.2
3,752,314	-		Psyr_3129	0.16	-0.3
3,752,329	-		Psyr_3129	0.18	+0.5
3,752,329	-		Psyr_3129	0.18	-1.2
3,752,416	+		Psyr_3129	0.28	+1.0
3,752,446	-		Psyr_3129	0.32	-0.6
3,752,486	-		Psyr_3129	0.36	+0.7
3,752,580	+		Psyr_3129	0.47	-0.7
3,752,581	-		Psyr_3129	0.47	+0.5
3,752,581	-		Psyr_3129	0.47	-0.5
3,752,581	-		Psyr_3129	0.47	-1.0
3,752,581	-		Psyr_3129	0.47	+1.0
3,752,581	-		Psyr_3129	0.47	-1.0
3,752,581	-		Psyr_3129	0.47	+0.8
3,752,581	-		Psyr_3129	0.47	-1.3
3,752,582	+		Psyr_3129	0.47	-1.9
3,752,662	-		Psyr_3129	0.57	-1.2
3,752,686	-		Psyr_3129	0.59	+1.7
3,752,686	-		Psyr_3129	0.59	+0.4
3,752,686	-		Psyr_3129	0.59	-2.7
3,752,686	-		Psyr_3129	0.59	-0.7
3,752,687	+		Psyr_3129	0.60	-1.2
3,752,687	+		Psyr_3129	0.60	+2.7
3,752,688	-		Psyr_3129	0.60	-2.2
3,752,691	+		Psyr_3129	0.60	-0.0
3,752,691	+		Psyr_3129	0.60	+0.5
3,752,691	+		Psyr_3129	0.60	-0.0
3,752,691	+		Psyr_3129	0.60	-0.3
3,752,692	-		Psyr_3129	0.60	+1.3
3,752,692	-		Psyr_3129	0.60	-0.8
3,752,692	-		Psyr_3129	0.60	-1.4
3,752,744	+		Psyr_3129	0.66	-0.8
3,752,745	-		Psyr_3129	0.66	-0.7
3,752,764	+		Psyr_3129	0.69	-0.6
3,752,765	-		Psyr_3129	0.69	+0.5
3,752,765	-		Psyr_3129	0.69	-0.4
3,752,774	+		Psyr_3129	0.70	-0.0
3,752,779	-		Psyr_3129	0.70	+0.2
3,752,779	-		Psyr_3129	0.70	+1.1
3,752,779	-		Psyr_3129	0.70	-2.2
3,752,841	+		Psyr_3129	0.77	+0.4
3,752,841	+		Psyr_3129	0.77	+0.5
3,752,841	+		Psyr_3129	0.77	+0.2
3,752,841	+		Psyr_3129	0.77	+1.4
3,752,842	-		Psyr_3129	0.78	+0.3
3,752,842	-		Psyr_3129	0.78	-0.2
3,752,842	-		Psyr_3129	0.78	-1.1
3,752,877	+		Psyr_3129	0.82	+0.8
3,752,878	-		Psyr_3129	0.82	-0.1
3,752,878	-		Psyr_3129	0.82	+0.2
3,752,878	-		Psyr_3129	0.82	-0.3
3,752,878	-		Psyr_3129	0.82	-0.9
3,752,971	+				+0.7
3,752,971	+				+0.1
3,752,972	-				+0.8
3,752,972	-				-1.8
3,752,972	-				+0.0
3,752,972	-				-2.0
3,753,124	+				+0.1
3,753,125	-				+2.7
3,753,208	+				+0.7
3,753,209	-				+1.9
3,753,227	+				-0.2
3,753,246	-				+0.5
3,753,246	-				+2.7
3,753,324	-		Psyr_3130	0.16	+0.3
3,753,559	+		Psyr_3130	0.36	+0.3
3,753,559	+		Psyr_3130	0.36	+0.7
3,753,559	+		Psyr_3130	0.36	+0.1
3,753,560	-		Psyr_3130	0.36	+3.3
3,753,594	+		Psyr_3130	0.39	-2.0
3,753,594	+		Psyr_3130	0.39	+0.5
3,753,700	+		Psyr_3130	0.48	-0.2
3,753,700	+		Psyr_3130	0.48	+0.4
3,753,703	-		Psyr_3130	0.48	-0.7
3,753,745	+		Psyr_3130	0.52	+0.0