Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3119

Experiment: KB with capsaicin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.125 mg/ml
3,738,404	-		Psyr_3118	0.44	-0.9
3,738,639	+		Psyr_3118	0.76	-0.2
3,738,640	-		Psyr_3118	0.77	+0.3
3,738,640	-		Psyr_3118	0.77	-0.9
3,738,833	+				-1.0
3,738,833	+				+1.3
3,739,022	+				-0.1
3,739,022	+				-0.9
3,739,022	+				-0.1
3,739,022	+				-0.2
3,739,022	+				-0.7
3,739,023	-				+0.5
3,739,023	-				+2.0
3,739,023	-				+0.4
3,739,023	-				-0.9
3,739,023	-				+0.2
3,739,023	-				-0.4
3,739,023	-				-0.6
3,739,047	-				-0.2
3,739,066	+				-1.9
3,739,067	-				+0.8
3,739,122	+				-0.6
3,739,123	-				-0.7
3,739,123	-				-0.7
3,739,211	-				-0.7
3,739,359	+				+1.5
3,739,359	+				+0.2
3,739,359	+				+0.3
3,739,359	+				+0.1
3,739,359	+				-0.5
3,739,360	-				+1.3
3,739,360	-				-0.1
3,739,360	-				-0.6
3,739,360	-				+0.9
3,739,465	-		Psyr_3119	0.16	-0.6
3,739,517	+		Psyr_3119	0.20	-0.8
3,739,517	+		Psyr_3119	0.20	-1.6
3,739,518	-		Psyr_3119	0.20	+1.4
3,739,518	-		Psyr_3119	0.20	-0.9
3,739,518	-		Psyr_3119	0.20	-0.9
3,739,597	-		Psyr_3119	0.26	-0.3
3,739,597	-		Psyr_3119	0.26	+1.1
3,739,653	+		Psyr_3119	0.30	+0.3
3,739,653	+		Psyr_3119	0.30	-0.7
3,739,653	+		Psyr_3119	0.30	-0.7
3,739,654	-		Psyr_3119	0.30	+3.0
3,739,654	-		Psyr_3119	0.30	+1.2
3,739,654	-		Psyr_3119	0.30	+0.7
3,739,654	-		Psyr_3119	0.30	+1.7
3,739,654	-		Psyr_3119	0.30	+0.7
3,739,656	+		Psyr_3119	0.31	+0.3
3,739,656	+		Psyr_3119	0.31	-1.3
3,739,656	+		Psyr_3119	0.31	-1.7
3,739,656	+		Psyr_3119	0.31	-2.5
3,739,656	+		Psyr_3119	0.31	+0.2
3,739,656	+		Psyr_3119	0.31	-0.7
3,739,657	-		Psyr_3119	0.31	-0.0
3,739,657	-		Psyr_3119	0.31	+0.8
3,739,657	-		Psyr_3119	0.31	+0.0
3,739,657	-		Psyr_3119	0.31	-1.3
3,739,806	+		Psyr_3119	0.42	-1.5
3,739,806	+		Psyr_3119	0.42	-3.3
3,739,806	+		Psyr_3119	0.42	+0.5
3,739,806	+		Psyr_3119	0.42	-1.4
3,739,807	-		Psyr_3119	0.42	+0.8
3,739,807	-		Psyr_3119	0.42	-1.0
3,739,807	-		Psyr_3119	0.42	-0.3
3,739,807	-		Psyr_3119	0.42	+0.2
3,740,025	+		Psyr_3119	0.58	-0.7
3,740,025	+		Psyr_3119	0.58	+0.3
3,740,026	-		Psyr_3119	0.58	-0.5
3,740,026	-		Psyr_3119	0.58	-0.8
3,740,050	-		Psyr_3119	0.60	-0.1
3,740,050	-		Psyr_3119	0.60	+0.7
3,740,160	+		Psyr_3119	0.68	+0.7
3,740,160	+		Psyr_3119	0.68	-2.4
3,740,160	+		Psyr_3119	0.68	+0.2
3,740,160	+		Psyr_3119	0.68	-1.2
3,740,160	+		Psyr_3119	0.68	-0.3
3,740,160	+		Psyr_3119	0.68	-0.7
3,740,160	+		Psyr_3119	0.68	-0.3
3,740,160	+		Psyr_3119	0.68	-1.2
3,740,160	+		Psyr_3119	0.68	-2.0
3,740,160	+		Psyr_3119	0.68	+0.1
3,740,160	+		Psyr_3119	0.68	+0.7
3,740,161	-		Psyr_3119	0.68	-0.3
3,740,161	-		Psyr_3119	0.68	+0.3
3,740,161	-		Psyr_3119	0.68	+0.5
3,740,161	-		Psyr_3119	0.68	-0.2
3,740,161	-		Psyr_3119	0.68	+0.1
3,740,161	-		Psyr_3119	0.68	-0.8
3,740,349	+		Psyr_3119	0.82	-1.0
3,740,350	-		Psyr_3119	0.82	+0.7
3,740,350	-		Psyr_3119	0.82	-0.9
3,740,534	+				-0.3
3,740,624	-				+0.1
3,740,624	-				-0.1
3,740,637	+				-0.5
3,740,637	+				+3.2
3,740,638	-				-0.3
3,740,638	-				+0.1
3,740,638	-				-0.3
3,740,638	-				+0.4
3,740,643	+				+1.7
3,740,643	+				+0.9
3,740,643	+				+0.1
3,740,644	-				+0.2
3,740,644	-				+0.5
3,740,676	+				-1.7
3,740,677	-				+1.0
3,740,774	-				-0.1
3,740,774	-				-0.2
3,740,790	-				+1.3
3,740,790	-				-1.0
3,740,790	-				-1.3
3,740,909	-		Psyr_3120	0.19	+0.7
3,741,127	+		Psyr_3120	0.35	-0.6
3,741,127	+		Psyr_3120	0.35	-0.7
3,741,128	-		Psyr_3120	0.35	+0.7