Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2954

Experiment: KB with capsaicin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2952 and Psyr_2953 are separated by 30 nucleotidesPsyr_2953 and Psyr_2954 are separated by 4 nucleotidesPsyr_2954 and Psyr_2955 are separated by 33 nucleotidesPsyr_2955 and Psyr_2956 are separated by 71 nucleotides Psyr_2952: Psyr_2952 - NADP oxidoreductase, coenzyme F420-dependent, at 3,540,809 to 3,541,438 _2952 Psyr_2953: Psyr_2953 - Catalytic LigB subunit of aromatic ring-opening dioxygenase, at 3,541,469 to 3,542,302 _2953 Psyr_2954: Psyr_2954 - Phospholipase/Carboxylesterase, at 3,542,307 to 3,542,978 _2954 Psyr_2955: Psyr_2955 - Surfeit locus 4-related protein, at 3,543,012 to 3,543,413 _2955 Psyr_2956: Psyr_2956 - Zinc-containing alcohol dehydrogenase superfamily, at 3,543,485 to 3,544,594 _2956 Position (kb) 3542 3543Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3541.379 kb on + strandat 3541.379 kb on + strandat 3541.379 kb on + strandat 3541.380 kb on - strandat 3541.380 kb on - strandat 3541.436 kb on + strandat 3541.436 kb on + strandat 3541.436 kb on + strandat 3541.437 kb on - strandat 3541.437 kb on - strandat 3541.694 kb on + strand, within Psyr_2953at 3541.694 kb on + strand, within Psyr_2953at 3541.694 kb on + strand, within Psyr_2953at 3541.695 kb on - strand, within Psyr_2953at 3541.695 kb on - strand, within Psyr_2953at 3541.695 kb on - strand, within Psyr_2953at 3541.695 kb on - strand, within Psyr_2953at 3541.695 kb on - strand, within Psyr_2953at 3541.696 kb on + strand, within Psyr_2953at 3541.696 kb on + strand, within Psyr_2953at 3541.696 kb on + strand, within Psyr_2953at 3541.696 kb on + strand, within Psyr_2953at 3541.697 kb on - strand, within Psyr_2953at 3541.697 kb on - strand, within Psyr_2953at 3541.697 kb on - strand, within Psyr_2953at 3541.697 kb on - strand, within Psyr_2953at 3541.741 kb on + strand, within Psyr_2953at 3541.741 kb on + strand, within Psyr_2953at 3541.742 kb on - strand, within Psyr_2953at 3541.742 kb on - strand, within Psyr_2953at 3541.742 kb on - strand, within Psyr_2953at 3541.825 kb on + strand, within Psyr_2953at 3541.825 kb on + strand, within Psyr_2953at 3541.825 kb on + strand, within Psyr_2953at 3541.825 kb on + strand, within Psyr_2953at 3541.825 kb on + strand, within Psyr_2953at 3541.825 kb on + strand, within Psyr_2953at 3541.825 kb on + strand, within Psyr_2953at 3541.825 kb on + strand, within Psyr_2953at 3541.825 kb on + strand, within Psyr_2953at 3541.825 kb on + strand, within Psyr_2953at 3541.825 kb on + strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.829 kb on + strand, within Psyr_2953at 3541.829 kb on + strand, within Psyr_2953at 3541.830 kb on - strand, within Psyr_2953at 3541.830 kb on - strand, within Psyr_2953at 3541.830 kb on - strand, within Psyr_2953at 3541.830 kb on - strand, within Psyr_2953at 3541.830 kb on - strand, within Psyr_2953at 3541.888 kb on + strand, within Psyr_2953at 3541.944 kb on + strand, within Psyr_2953at 3541.944 kb on + strand, within Psyr_2953at 3541.945 kb on - strand, within Psyr_2953at 3541.945 kb on - strand, within Psyr_2953at 3541.983 kb on - strand, within Psyr_2953at 3542.087 kb on + strand, within Psyr_2953at 3542.097 kb on - strand, within Psyr_2953at 3542.207 kb on - strand, within Psyr_2953at 3542.210 kb on - strand, within Psyr_2953at 3542.237 kb on + strandat 3542.237 kb on + strandat 3542.238 kb on - strandat 3542.238 kb on - strandat 3542.245 kb on + strandat 3542.300 kb on + strandat 3542.300 kb on + strandat 3542.375 kb on + strand, within Psyr_2954at 3542.375 kb on + strand, within Psyr_2954at 3542.375 kb on + strand, within Psyr_2954at 3542.376 kb on - strand, within Psyr_2954at 3542.376 kb on - strand, within Psyr_2954at 3542.376 kb on - strand, within Psyr_2954at 3542.376 kb on - strand, within Psyr_2954at 3542.420 kb on - strand, within Psyr_2954at 3542.596 kb on + strand, within Psyr_2954at 3542.597 kb on - strand, within Psyr_2954at 3542.597 kb on - strand, within Psyr_2954at 3542.821 kb on + strand, within Psyr_2954at 3542.821 kb on + strand, within Psyr_2954at 3542.821 kb on + strand, within Psyr_2954at 3542.991 kb on - strandat 3542.994 kb on + strandat 3542.994 kb on + strandat 3542.995 kb on - strandat 3543.100 kb on + strand, within Psyr_2955at 3543.101 kb on - strand, within Psyr_2955at 3543.110 kb on + strand, within Psyr_2955at 3543.122 kb on + strand, within Psyr_2955at 3543.122 kb on + strand, within Psyr_2955at 3543.212 kb on - strand, within Psyr_2955at 3543.336 kb on + strand, within Psyr_2955at 3543.337 kb on - strand, within Psyr_2955at 3543.337 kb on - strand, within Psyr_2955at 3543.600 kb on + strand, within Psyr_2956at 3543.601 kb on - strand, within Psyr_2956at 3543.601 kb on - strand, within Psyr_2956at 3543.601 kb on - strand, within Psyr_2956at 3543.601 kb on - strand, within Psyr_2956at 3543.660 kb on + strand, within Psyr_2956at 3543.697 kb on - strand, within Psyr_2956at 3543.778 kb on + strand, within Psyr_2956at 3543.779 kb on - strand, within Psyr_2956at 3543.863 kb on + strand, within Psyr_2956at 3543.864 kb on - strand, within Psyr_2956at 3543.881 kb on + strand, within Psyr_2956at 3543.882 kb on - strand, within Psyr_2956at 3543.887 kb on + strand, within Psyr_2956at 3543.887 kb on + strand, within Psyr_2956at 3543.887 kb on + strand, within Psyr_2956at 3543.887 kb on + strand, within Psyr_2956at 3543.888 kb on - strand, within Psyr_2956at 3543.888 kb on - strand, within Psyr_2956at 3543.914 kb on + strand, within Psyr_2956at 3543.915 kb on - strand, within Psyr_2956

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml
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3,541,379 + -0.5
3,541,379 + -0.4
3,541,379 + +0.2
3,541,380 - -3.3
3,541,380 - +0.0
3,541,436 + -0.2
3,541,436 + +0.4
3,541,436 + -1.1
3,541,437 - +0.3
3,541,437 - +0.7
3,541,694 + Psyr_2953 0.27 -0.5
3,541,694 + Psyr_2953 0.27 +0.2
3,541,694 + Psyr_2953 0.27 +0.6
3,541,695 - Psyr_2953 0.27 -0.8
3,541,695 - Psyr_2953 0.27 -0.1
3,541,695 - Psyr_2953 0.27 +0.9
3,541,695 - Psyr_2953 0.27 -0.5
3,541,695 - Psyr_2953 0.27 -0.2
3,541,696 + Psyr_2953 0.27 +0.3
3,541,696 + Psyr_2953 0.27 +0.1
3,541,696 + Psyr_2953 0.27 +0.9
3,541,696 + Psyr_2953 0.27 +0.8
3,541,697 - Psyr_2953 0.27 +1.4
3,541,697 - Psyr_2953 0.27 -0.6
3,541,697 - Psyr_2953 0.27 +0.4
3,541,697 - Psyr_2953 0.27 +1.3
3,541,741 + Psyr_2953 0.33 -0.2
3,541,741 + Psyr_2953 0.33 +0.1
3,541,742 - Psyr_2953 0.33 +1.4
3,541,742 - Psyr_2953 0.33 +0.9
3,541,742 - Psyr_2953 0.33 +0.2
3,541,825 + Psyr_2953 0.43 -0.7
3,541,825 + Psyr_2953 0.43 +0.2
3,541,825 + Psyr_2953 0.43 -1.2
3,541,825 + Psyr_2953 0.43 +0.0
3,541,825 + Psyr_2953 0.43 -0.2
3,541,825 + Psyr_2953 0.43 +1.2
3,541,825 + Psyr_2953 0.43 +0.5
3,541,825 + Psyr_2953 0.43 +0.7
3,541,825 + Psyr_2953 0.43 -0.9
3,541,825 + Psyr_2953 0.43 +0.2
3,541,825 + Psyr_2953 0.43 +0.3
3,541,826 - Psyr_2953 0.43 +0.2
3,541,826 - Psyr_2953 0.43 -0.2
3,541,826 - Psyr_2953 0.43 +0.6
3,541,826 - Psyr_2953 0.43 +0.5
3,541,826 - Psyr_2953 0.43 -1.8
3,541,826 - Psyr_2953 0.43 -0.0
3,541,826 - Psyr_2953 0.43 -1.0
3,541,826 - Psyr_2953 0.43 +0.4
3,541,826 - Psyr_2953 0.43 -2.0
3,541,826 - Psyr_2953 0.43 -0.1
3,541,826 - Psyr_2953 0.43 -0.0
3,541,826 - Psyr_2953 0.43 +1.2
3,541,826 - Psyr_2953 0.43 -0.1
3,541,826 - Psyr_2953 0.43 -0.0
3,541,826 - Psyr_2953 0.43 -1.5
3,541,826 - Psyr_2953 0.43 +2.8
3,541,826 - Psyr_2953 0.43 -0.4
3,541,826 - Psyr_2953 0.43 -0.5
3,541,829 + Psyr_2953 0.43 +0.2
3,541,829 + Psyr_2953 0.43 -0.8
3,541,830 - Psyr_2953 0.43 +0.7
3,541,830 - Psyr_2953 0.43 +0.0
3,541,830 - Psyr_2953 0.43 +0.5
3,541,830 - Psyr_2953 0.43 +0.6
3,541,830 - Psyr_2953 0.43 -0.0
3,541,888 + Psyr_2953 0.50 -0.6
3,541,944 + Psyr_2953 0.57 +1.1
3,541,944 + Psyr_2953 0.57 -0.1
3,541,945 - Psyr_2953 0.57 -2.2
3,541,945 - Psyr_2953 0.57 +0.1
3,541,983 - Psyr_2953 0.62 +0.0
3,542,087 + Psyr_2953 0.74 -0.4
3,542,097 - Psyr_2953 0.75 -1.8
3,542,207 - Psyr_2953 0.88 -0.8
3,542,210 - Psyr_2953 0.89 +3.1
3,542,237 + +0.2
3,542,237 + +1.1
3,542,238 - +0.5
3,542,238 - -1.9
3,542,245 + +1.6
3,542,300 + +0.4
3,542,300 + +0.8
3,542,375 + Psyr_2954 0.10 +0.3
3,542,375 + Psyr_2954 0.10 -0.2
3,542,375 + Psyr_2954 0.10 -0.1
3,542,376 - Psyr_2954 0.10 -0.8
3,542,376 - Psyr_2954 0.10 -0.2
3,542,376 - Psyr_2954 0.10 +0.2
3,542,376 - Psyr_2954 0.10 -1.6
3,542,420 - Psyr_2954 0.17 -0.8
3,542,596 + Psyr_2954 0.43 +1.0
3,542,597 - Psyr_2954 0.43 +1.1
3,542,597 - Psyr_2954 0.43 -1.0
3,542,821 + Psyr_2954 0.76 +0.1
3,542,821 + Psyr_2954 0.76 +0.4
3,542,821 + Psyr_2954 0.76 +1.2
3,542,991 - -0.1
3,542,994 + -0.0
3,542,994 + +0.3
3,542,995 - +0.0
3,543,100 + Psyr_2955 0.22 +0.3
3,543,101 - Psyr_2955 0.22 +0.2
3,543,110 + Psyr_2955 0.24 -0.6
3,543,122 + Psyr_2955 0.27 -1.6
3,543,122 + Psyr_2955 0.27 +0.8
3,543,212 - Psyr_2955 0.50 -1.7
3,543,336 + Psyr_2955 0.81 -0.4
3,543,337 - Psyr_2955 0.81 -1.0
3,543,337 - Psyr_2955 0.81 +1.7
3,543,600 + Psyr_2956 0.10 +0.6
3,543,601 - Psyr_2956 0.10 -0.2
3,543,601 - Psyr_2956 0.10 -0.7
3,543,601 - Psyr_2956 0.10 -1.0
3,543,601 - Psyr_2956 0.10 -0.7
3,543,660 + Psyr_2956 0.16 +0.3
3,543,697 - Psyr_2956 0.19 +0.8
3,543,778 + Psyr_2956 0.26 +1.3
3,543,779 - Psyr_2956 0.26 +1.6
3,543,863 + Psyr_2956 0.34 +1.0
3,543,864 - Psyr_2956 0.34 +1.8
3,543,881 + Psyr_2956 0.36 -0.4
3,543,882 - Psyr_2956 0.36 +0.8
3,543,887 + Psyr_2956 0.36 +0.2
3,543,887 + Psyr_2956 0.36 +0.8
3,543,887 + Psyr_2956 0.36 +0.2
3,543,887 + Psyr_2956 0.36 +0.0
3,543,888 - Psyr_2956 0.36 +1.8
3,543,888 - Psyr_2956 0.36 +0.0
3,543,914 + Psyr_2956 0.39 +1.0
3,543,915 - Psyr_2956 0.39 +0.3

Or see this region's nucleotide sequence