Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2936

Experiment: KB with capsaicin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.125 mg/ml
3,522,895	+		Psyr_2934	0.72	-0.2
3,523,000	-		Psyr_2934	0.82	-1.6
3,523,006	+		Psyr_2934	0.82	-0.8
3,523,007	-		Psyr_2934	0.82	-0.2
3,523,007	-		Psyr_2934	0.82	+0.4
3,523,007	-		Psyr_2934	0.82	+0.6
3,523,079	+		Psyr_2934	0.89	+1.0
3,523,080	-		Psyr_2934	0.89	-0.0
3,523,150	+				-0.2
3,523,171	+				-0.0
3,523,171	+				+0.4
3,523,171	+				+0.4
3,523,172	-				+0.2
3,523,172	-				+0.1
3,523,172	-				-0.5
3,523,172	-				-0.7
3,523,195	+				-0.2
3,523,195	+				-0.6
3,523,195	+				-0.2
3,523,195	+				-0.2
3,523,195	+				-1.0
3,523,195	+				+0.8
3,523,196	-				-0.1
3,523,196	-				-0.3
3,523,198	+				-0.5
3,523,199	-				-0.0
3,523,199	-				+1.1
3,523,249	-				-0.7
3,523,279	+				-0.1
3,523,279	+				+1.8
3,523,360	-				-0.3
3,523,395	+				-1.4
3,523,395	+				-1.2
3,523,396	-				+0.3
3,523,396	-				-1.2
3,523,440	+				+0.8
3,523,441	-				+0.8
3,523,441	-				-0.4
3,523,470	+		Psyr_2935	0.17	+0.4
3,523,470	+		Psyr_2935	0.17	-0.1
3,523,470	+		Psyr_2935	0.17	+0.1
3,523,470	+		Psyr_2935	0.17	-0.8
3,523,471	-		Psyr_2935	0.17	+0.3
3,523,471	-		Psyr_2935	0.17	-0.4
3,523,471	-		Psyr_2935	0.17	-0.6
3,523,474	+		Psyr_2935	0.18	+0.2
3,523,474	+		Psyr_2935	0.18	+1.6
3,523,474	+		Psyr_2935	0.18	+0.5
3,523,474	+		Psyr_2935	0.18	-0.3
3,523,474	+		Psyr_2935	0.18	+0.2
3,523,474	+		Psyr_2935	0.18	-1.0
3,523,475	-		Psyr_2935	0.18	+0.6
3,523,475	-		Psyr_2935	0.18	+0.5
3,523,475	-		Psyr_2935	0.18	+1.4
3,523,475	-		Psyr_2935	0.18	-0.4
3,523,475	-		Psyr_2935	0.18	+0.7
3,523,475	-		Psyr_2935	0.18	+0.3
3,523,523	+		Psyr_2935	0.31	-0.3
3,523,539	+		Psyr_2935	0.35	+1.1
3,523,539	+		Psyr_2935	0.35	+0.1
3,523,539	+		Psyr_2935	0.35	+1.5
3,523,540	-		Psyr_2935	0.35	+0.8
3,523,540	-		Psyr_2935	0.35	+0.6
3,523,540	-		Psyr_2935	0.35	+0.1
3,523,540	-		Psyr_2935	0.35	-0.6
3,523,540	-		Psyr_2935	0.35	+0.2
3,523,588	-		Psyr_2935	0.48	-0.1
3,523,588	-		Psyr_2935	0.48	-0.4
3,523,610	+		Psyr_2935	0.53	+0.3
3,523,698	-		Psyr_2935	0.76	-0.6
3,523,698	-		Psyr_2935	0.76	-0.4
3,523,710	+		Psyr_2935	0.79	+0.8
3,523,711	-		Psyr_2935	0.79	-0.7
3,523,719	+		Psyr_2935	0.81	+0.8
3,523,720	-		Psyr_2935	0.82	-2.0
3,523,771	-				-0.8
3,524,240	-		Psyr_2936	0.59	-2.8
3,524,240	-		Psyr_2936	0.59	-0.4
3,524,269	+		Psyr_2936	0.63	-1.6
3,524,269	+		Psyr_2936	0.63	-0.2
3,524,269	+		Psyr_2936	0.63	+0.1
3,524,269	+		Psyr_2936	0.63	-1.3
3,524,270	-		Psyr_2936	0.64	-0.2
3,524,270	-		Psyr_2936	0.64	-0.2
3,524,270	-		Psyr_2936	0.64	-0.5
3,524,270	-		Psyr_2936	0.64	-1.7
3,524,472	+				-2.1
3,524,473	-				-0.6
3,524,823	+		Psyr_2937	0.27	-2.1
3,524,823	+		Psyr_2937	0.27	+0.1
3,524,823	+		Psyr_2937	0.27	+0.4
3,524,823	+		Psyr_2937	0.27	-1.7
3,524,823	+		Psyr_2937	0.27	+0.5
3,524,824	-		Psyr_2937	0.27	+0.4
3,524,824	-		Psyr_2937	0.27	+0.8
3,524,824	-		Psyr_2937	0.27	+1.7
3,525,083	+				+0.2
3,525,083	+		Psyr_2937	0.51	-0.3
3,525,083	+		Psyr_2937	0.51	+0.2
3,525,083	+		Psyr_2937	0.51	-0.7
3,525,083	+		Psyr_2937	0.51	+0.8
3,525,083	+		Psyr_2937	0.51	+0.3
3,525,084	-		Psyr_2937	0.51	+0.1
3,525,084	-		Psyr_2937	0.51	-0.9
3,525,084	-		Psyr_2937	0.51	+0.8
3,525,084	-		Psyr_2937	0.51	+2.3
3,525,084	-		Psyr_2937	0.51	+2.1
3,525,084	-		Psyr_2937	0.51	-0.9
3,525,084	-		Psyr_2937	0.51	-0.8
3,525,207	+		Psyr_2937	0.62	-0.2
3,525,210	+		Psyr_2937	0.62	+0.1
3,525,210	+		Psyr_2937	0.62	-0.8
3,525,211	-		Psyr_2937	0.62	+0.1
3,525,211	-		Psyr_2937	0.62	-1.6
3,525,211	-		Psyr_2937	0.62	+2.8
3,525,211	-		Psyr_2937	0.62	+0.3
3,525,432	+		Psyr_2937	0.83	+0.6
3,525,432	+		Psyr_2937	0.83	+0.8
3,525,433	-		Psyr_2937	0.83	-0.3
3,525,433	-		Psyr_2937	0.83	+0.9
3,525,433	-		Psyr_2937	0.83	+0.8
3,525,484	-		Psyr_2937	0.87	-0.3
3,525,484	-		Psyr_2937	0.87	-0.9
3,525,487	-		Psyr_2937	0.88	+0.2