Experiment: KB with capsaicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2926 and Psyr_2927 are separated by 110 nucleotides Psyr_2927 and Psyr_2928 are separated by 79 nucleotides
Psyr_2926: Psyr_2926 - General substrate transporter:Major facilitator superfamily, at 3,514,660 to 3,515,865
_2926
Psyr_2927: Psyr_2927 - transcriptional regulator, TetR family, at 3,515,976 to 3,516,602
_2927
Psyr_2928: Psyr_2928 - ABC transporter, transmembrane region:ABC transporter, at 3,516,682 to 3,518,535
_2928
Position (kb)
3515
3516
3517 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3515.171 kb on + strand, within Psyr_2926 at 3515.171 kb on + strand, within Psyr_2926 at 3515.171 kb on + strand, within Psyr_2926 at 3515.171 kb on + strand, within Psyr_2926 at 3515.172 kb on - strand, within Psyr_2926 at 3515.172 kb on - strand, within Psyr_2926 at 3515.177 kb on + strand, within Psyr_2926 at 3515.177 kb on + strand, within Psyr_2926 at 3515.177 kb on + strand, within Psyr_2926 at 3515.177 kb on + strand, within Psyr_2926 at 3515.188 kb on - strand, within Psyr_2926 at 3515.694 kb on - strand, within Psyr_2926 at 3515.859 kb on + strand at 3515.860 kb on - strand at 3515.934 kb on - strand at 3516.016 kb on + strand at 3516.124 kb on - strand, within Psyr_2927 at 3516.186 kb on + strand, within Psyr_2927 at 3516.408 kb on - strand, within Psyr_2927 at 3516.500 kb on + strand, within Psyr_2927 at 3516.793 kb on + strand at 3516.794 kb on - strand at 3516.835 kb on + strand at 3516.925 kb on - strand, within Psyr_2928 at 3516.925 kb on - strand, within Psyr_2928 at 3517.004 kb on + strand, within Psyr_2928 at 3517.004 kb on + strand, within Psyr_2928 at 3517.187 kb on - strand, within Psyr_2928 at 3517.187 kb on - strand, within Psyr_2928 at 3517.187 kb on - strand, within Psyr_2928 at 3517.187 kb on - strand, within Psyr_2928 at 3517.282 kb on + strand, within Psyr_2928 at 3517.282 kb on + strand, within Psyr_2928 at 3517.282 kb on + strand, within Psyr_2928 at 3517.283 kb on - strand, within Psyr_2928 at 3517.283 kb on - strand, within Psyr_2928 at 3517.363 kb on + strand, within Psyr_2928 at 3517.363 kb on + strand, within Psyr_2928 at 3517.364 kb on - strand, within Psyr_2928 at 3517.364 kb on - strand, within Psyr_2928 at 3517.364 kb on - strand, within Psyr_2928 at 3517.382 kb on + strand, within Psyr_2928
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml remove 3,515,171 + Psyr_2926 0.42 -2.7 3,515,171 + Psyr_2926 0.42 -0.8 3,515,171 + Psyr_2926 0.42 -0.8 3,515,171 + Psyr_2926 0.42 -1.0 3,515,172 - Psyr_2926 0.42 +2.5 3,515,172 - Psyr_2926 0.42 +0.1 3,515,177 + Psyr_2926 0.43 -0.2 3,515,177 + Psyr_2926 0.43 +1.3 3,515,177 + Psyr_2926 0.43 -0.3 3,515,177 + Psyr_2926 0.43 +0.3 3,515,188 - Psyr_2926 0.44 +0.1 3,515,694 - Psyr_2926 0.86 -1.9 3,515,859 + -0.2 3,515,860 - +1.5 3,515,934 - +0.3 3,516,016 + -0.4 3,516,124 - Psyr_2927 0.24 -0.1 3,516,186 + Psyr_2927 0.33 +0.0 3,516,408 - Psyr_2927 0.69 -1.7 3,516,500 + Psyr_2927 0.84 -1.0 3,516,793 + +0.5 3,516,794 - +2.1 3,516,835 + -0.1 3,516,925 - Psyr_2928 0.13 -0.3 3,516,925 - Psyr_2928 0.13 -1.7 3,517,004 + Psyr_2928 0.17 -0.0 3,517,004 + Psyr_2928 0.17 +0.0 3,517,187 - Psyr_2928 0.27 -1.4 3,517,187 - Psyr_2928 0.27 +0.9 3,517,187 - Psyr_2928 0.27 -0.8 3,517,187 - Psyr_2928 0.27 -0.8 3,517,282 + Psyr_2928 0.32 +0.6 3,517,282 + Psyr_2928 0.32 -0.9 3,517,282 + Psyr_2928 0.32 +0.8 3,517,283 - Psyr_2928 0.32 +0.8 3,517,283 - Psyr_2928 0.32 +0.0 3,517,363 + Psyr_2928 0.37 +3.0 3,517,363 + Psyr_2928 0.37 -1.8 3,517,364 - Psyr_2928 0.37 -0.2 3,517,364 - Psyr_2928 0.37 -0.7 3,517,364 - Psyr_2928 0.37 +0.0 3,517,382 + Psyr_2928 0.38 -0.6
Or see this region's nucleotide sequence