Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2633

Experiment: KB with capsaicin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.125 mg/ml
3,196,964	+		Psyr_2632	0.71	-0.8
3,196,964	+		Psyr_2632	0.71	+1.1
3,196,964	+		Psyr_2632	0.71	-0.0
3,196,964	+		Psyr_2632	0.71	+1.3
3,196,964	+		Psyr_2632	0.71	+0.3
3,196,964	+		Psyr_2632	0.71	-0.4
3,196,965	-		Psyr_2632	0.71	-1.1
3,196,965	-		Psyr_2632	0.71	+0.0
3,196,965	-		Psyr_2632	0.71	-0.5
3,196,965	-		Psyr_2632	0.71	-0.1
3,196,965	-		Psyr_2632	0.71	-0.5
3,196,965	-		Psyr_2632	0.71	+0.1
3,196,965	-		Psyr_2632	0.71	+0.1
3,196,965	-		Psyr_2632	0.71	+0.8
3,196,965	-		Psyr_2632	0.71	-0.5
3,196,965	-		Psyr_2632	0.71	-0.5
3,196,965	-		Psyr_2632	0.71	+0.3
3,196,965	-		Psyr_2632	0.71	+0.5
3,196,965	-		Psyr_2632	0.71	-1.5
3,197,035	+		Psyr_2632	0.73	-0.6
3,197,036	-		Psyr_2632	0.73	+0.7
3,197,071	+				-0.5
3,197,101	+		Psyr_2632	0.75	-1.8
3,197,102	-		Psyr_2632	0.75	-1.3
3,197,183	+		Psyr_2632	0.78	+3.4
3,197,353	+		Psyr_2632	0.83	+1.8
3,197,353	+		Psyr_2632	0.83	+0.4
3,197,353	+		Psyr_2632	0.83	+1.8
3,197,353	+		Psyr_2632	0.83	+0.4
3,197,353	+		Psyr_2632	0.83	-1.3
3,197,353	+		Psyr_2632	0.83	+0.2
3,197,354	-		Psyr_2632	0.83	-1.5
3,197,354	-		Psyr_2632	0.83	-0.2
3,197,378	+		Psyr_2632	0.84	+0.3
3,197,379	-		Psyr_2632	0.84	+1.2
3,197,379	-		Psyr_2632	0.84	-0.5
3,197,699	+				-0.2
3,197,699	+				+0.3
3,197,699	+				+1.0
3,197,699	+				-0.2
3,197,700	-				+2.4
3,197,700	-				+1.8
3,197,742	+				-0.0
3,197,742	+				+3.1
3,197,879	-				+1.3
3,197,887	+				+1.0
3,197,927	-				+0.9
3,198,450	-		Psyr_2633	0.42	+0.3
3,198,486	+		Psyr_2633	0.44	-1.5
3,198,486	+		Psyr_2633	0.44	-1.3
3,198,486	+		Psyr_2633	0.44	+0.8
3,198,487	-		Psyr_2633	0.44	-0.8
3,198,730	+		Psyr_2633	0.62	+1.4
3,198,731	-		Psyr_2633	0.62	-1.0
3,198,731	-		Psyr_2633	0.62	-1.1
3,198,800	-		Psyr_2633	0.67	-1.6
3,198,800	-		Psyr_2633	0.67	+0.8
3,198,853	+		Psyr_2633	0.71	+0.0
3,198,853	+		Psyr_2633	0.71	-0.1
3,198,853	+		Psyr_2633	0.71	-0.4
3,198,853	+		Psyr_2633	0.71	-0.2
3,198,853	+		Psyr_2633	0.71	-0.2
3,198,854	-		Psyr_2633	0.71	-0.4
3,198,885	+		Psyr_2633	0.74	-0.7
3,198,886	-		Psyr_2633	0.74	-0.6
3,198,965	+		Psyr_2633	0.80	-1.0
3,199,050	+		Psyr_2633	0.86	-1.7
3,199,050	+		Psyr_2633	0.86	-0.4
3,199,050	+		Psyr_2633	0.86	-0.8
3,199,050	+		Psyr_2633	0.86	-0.2
3,199,050	+		Psyr_2633	0.86	+0.5
3,199,050	+		Psyr_2633	0.86	-0.2
3,199,050	+		Psyr_2633	0.86	-0.9
3,199,050	+		Psyr_2633	0.86	+0.6
3,199,051	-		Psyr_2633	0.86	-0.2
3,199,051	-		Psyr_2633	0.86	+1.0
3,199,053	-		Psyr_2633	0.86	-0.0
3,199,053	-		Psyr_2633	0.86	-1.5
3,199,168	+				-1.7
3,199,169	-				+0.4
3,199,192	-				-0.1
3,199,242	-				-1.2
3,199,284	+				-1.0
3,199,284	+				+0.0
3,199,284	+				-0.6
3,199,285	-				-0.8
3,199,285	-				-2.0
3,199,333	+				-0.7
3,199,333	+				+0.4
3,199,334	-				+0.6
3,199,334	-				-0.8
3,199,334	-				+0.8
3,199,335	+				+1.6
3,199,335	+				-1.0
3,199,336	-				+1.9
3,199,402	+				-0.0
3,199,408	+				+1.7
3,199,409	-				+2.9
3,199,409	-				+1.2
3,199,513	-				+0.5
3,199,516	+				-0.0
3,199,516	+				-0.5
3,199,567	+				-0.0
3,199,615	-				-0.0
3,199,630	-				+0.1
3,199,630	-				-2.1
3,199,722	-				+0.6
3,199,724	-				-1.0
3,199,724	-				-0.5
3,199,788	-				-0.8
3,199,831	-				-0.7
3,199,831	-				-1.2
3,200,053	+		Psyr_2634	0.14	-1.2
3,200,117	+		Psyr_2634	0.18	+0.8
3,200,118	-		Psyr_2634	0.18	-2.0
3,200,126	+		Psyr_2634	0.19	-0.4
3,200,174	+		Psyr_2634	0.22	-0.3
3,200,174	+		Psyr_2634	0.22	-0.3
3,200,195	+		Psyr_2634	0.23	+0.1
3,200,195	+		Psyr_2634	0.23	+0.4
3,200,195	+		Psyr_2634	0.23	-1.8
3,200,196	-		Psyr_2634	0.23	-0.7
3,200,196	-		Psyr_2634	0.23	-0.3
3,200,196	-		Psyr_2634	0.23	+0.4