Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2631

Experiment: KB with capsaicin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2630 and Psyr_2631 are separated by 3 nucleotidesPsyr_2631 and Psyr_2632 overlap by 4 nucleotides Psyr_2630: Psyr_2630 - conserved hypothetical protein, at 3,191,012 to 3,192,040 _2630 Psyr_2631: Psyr_2631 - HopL1 protein, at 3,192,044 to 3,194,743 _2631 Psyr_2632: Psyr_2632 - virulence protein SrfB, at 3,194,740 to 3,197,874 _2632 Position (kb) 3192 3193 3194 3195Strain fitness (log2 ratio) -2 -1 0 1 2at 3191.139 kb on + strand, within Psyr_2630at 3191.139 kb on + strand, within Psyr_2630at 3191.139 kb on + strand, within Psyr_2630at 3191.139 kb on + strand, within Psyr_2630at 3191.139 kb on + strand, within Psyr_2630at 3191.140 kb on - strand, within Psyr_2630at 3191.140 kb on - strand, within Psyr_2630at 3191.143 kb on + strand, within Psyr_2630at 3191.144 kb on - strand, within Psyr_2630at 3191.152 kb on - strand, within Psyr_2630at 3191.164 kb on - strand, within Psyr_2630at 3191.334 kb on - strand, within Psyr_2630at 3191.342 kb on + strand, within Psyr_2630at 3191.495 kb on + strand, within Psyr_2630at 3191.495 kb on + strand, within Psyr_2630at 3191.496 kb on - strand, within Psyr_2630at 3191.671 kb on + strand, within Psyr_2630at 3191.910 kb on + strand, within Psyr_2630at 3191.910 kb on + strand, within Psyr_2630at 3191.913 kb on + strand, within Psyr_2630at 3191.913 kb on + strand, within Psyr_2630at 3191.914 kb on - strand, within Psyr_2630at 3191.975 kb on + strandat 3191.976 kb on - strandat 3191.976 kb on - strandat 3191.976 kb on - strandat 3192.046 kb on - strandat 3192.668 kb on + strand, within Psyr_2631at 3192.668 kb on + strand, within Psyr_2631at 3192.669 kb on - strand, within Psyr_2631at 3192.669 kb on - strand, within Psyr_2631at 3192.669 kb on - strand, within Psyr_2631at 3192.754 kb on - strand, within Psyr_2631at 3192.754 kb on - strand, within Psyr_2631at 3192.789 kb on + strand, within Psyr_2631at 3192.809 kb on + strand, within Psyr_2631at 3192.810 kb on - strand, within Psyr_2631at 3192.810 kb on - strand, within Psyr_2631at 3192.810 kb on - strand, within Psyr_2631at 3192.904 kb on - strand, within Psyr_2631at 3192.906 kb on + strand, within Psyr_2631at 3192.926 kb on + strand, within Psyr_2631at 3192.961 kb on + strand, within Psyr_2631at 3192.961 kb on + strand, within Psyr_2631at 3193.149 kb on + strand, within Psyr_2631at 3193.218 kb on + strand, within Psyr_2631at 3193.218 kb on + strand, within Psyr_2631at 3193.219 kb on - strand, within Psyr_2631at 3193.219 kb on - strand, within Psyr_2631at 3193.537 kb on - strand, within Psyr_2631at 3193.537 kb on - strand, within Psyr_2631at 3193.742 kb on - strand, within Psyr_2631at 3193.815 kb on - strand, within Psyr_2631at 3193.977 kb on + strand, within Psyr_2631at 3193.978 kb on - strand, within Psyr_2631at 3194.112 kb on + strand, within Psyr_2631at 3194.499 kb on + strandat 3194.717 kb on + strandat 3194.717 kb on + strandat 3194.717 kb on + strandat 3194.717 kb on + strandat 3194.718 kb on - strandat 3194.718 kb on - strandat 3194.775 kb on - strandat 3194.810 kb on + strandat 3194.810 kb on + strandat 3194.810 kb on + strandat 3194.811 kb on - strandat 3194.811 kb on - strandat 3194.811 kb on - strandat 3194.811 kb on - strandat 3195.026 kb on + strandat 3195.027 kb on - strandat 3195.027 kb on - strandat 3195.027 kb on - strandat 3195.027 kb on - strandat 3195.027 kb on - strandat 3195.027 kb on - strandat 3195.269 kb on + strand, within Psyr_2632at 3195.270 kb on - strand, within Psyr_2632at 3195.307 kb on + strand, within Psyr_2632at 3195.307 kb on + strand, within Psyr_2632at 3195.307 kb on + strand, within Psyr_2632at 3195.307 kb on + strand, within Psyr_2632at 3195.308 kb on - strand, within Psyr_2632at 3195.308 kb on - strand, within Psyr_2632at 3195.308 kb on - strand, within Psyr_2632at 3195.439 kb on + strand, within Psyr_2632at 3195.439 kb on + strandat 3195.440 kb on - strand, within Psyr_2632at 3195.441 kb on + strand, within Psyr_2632at 3195.441 kb on + strand, within Psyr_2632at 3195.441 kb on + strand, within Psyr_2632at 3195.441 kb on + strand, within Psyr_2632at 3195.441 kb on + strand, within Psyr_2632at 3195.441 kb on + strand, within Psyr_2632at 3195.442 kb on - strand, within Psyr_2632at 3195.442 kb on - strand, within Psyr_2632at 3195.442 kb on - strand, within Psyr_2632at 3195.442 kb on - strand, within Psyr_2632at 3195.442 kb on - strand, within Psyr_2632at 3195.442 kb on - strand, within Psyr_2632at 3195.443 kb on + strand, within Psyr_2632at 3195.443 kb on + strand, within Psyr_2632at 3195.443 kb on + strand, within Psyr_2632at 3195.443 kb on + strand, within Psyr_2632at 3195.443 kb on + strand, within Psyr_2632at 3195.443 kb on + strand, within Psyr_2632at 3195.443 kb on + strand, within Psyr_2632at 3195.443 kb on + strand, within Psyr_2632at 3195.443 kb on + strand, within Psyr_2632at 3195.443 kb on + strand, within Psyr_2632at 3195.444 kb on - strand, within Psyr_2632at 3195.444 kb on - strand, within Psyr_2632at 3195.444 kb on - strand, within Psyr_2632at 3195.444 kb on - strand, within Psyr_2632at 3195.444 kb on - strand, within Psyr_2632at 3195.665 kb on + strand, within Psyr_2632at 3195.665 kb on + strand, within Psyr_2632at 3195.665 kb on + strand, within Psyr_2632

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml
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3,191,139 + Psyr_2630 0.12 +2.5
3,191,139 + Psyr_2630 0.12 -2.0
3,191,139 + Psyr_2630 0.12 -0.7
3,191,139 + Psyr_2630 0.12 -1.4
3,191,139 + Psyr_2630 0.12 +0.1
3,191,140 - Psyr_2630 0.12 -0.5
3,191,140 - Psyr_2630 0.12 -0.5
3,191,143 + Psyr_2630 0.13 -1.5
3,191,144 - Psyr_2630 0.13 +0.4
3,191,152 - Psyr_2630 0.14 -0.2
3,191,164 - Psyr_2630 0.15 -0.6
3,191,334 - Psyr_2630 0.31 -0.2
3,191,342 + Psyr_2630 0.32 -0.5
3,191,495 + Psyr_2630 0.47 -0.4
3,191,495 + Psyr_2630 0.47 +0.3
3,191,496 - Psyr_2630 0.47 -1.1
3,191,671 + Psyr_2630 0.64 +2.6
3,191,910 + Psyr_2630 0.87 -0.4
3,191,910 + Psyr_2630 0.87 -0.8
3,191,913 + Psyr_2630 0.88 +0.2
3,191,913 + Psyr_2630 0.88 +0.8
3,191,914 - Psyr_2630 0.88 -0.2
3,191,975 + +0.8
3,191,976 - +2.0
3,191,976 - -0.0
3,191,976 - +1.8
3,192,046 - -0.7
3,192,668 + Psyr_2631 0.23 -0.7
3,192,668 + Psyr_2631 0.23 -0.8
3,192,669 - Psyr_2631 0.23 +0.2
3,192,669 - Psyr_2631 0.23 -2.3
3,192,669 - Psyr_2631 0.23 -0.8
3,192,754 - Psyr_2631 0.26 -1.2
3,192,754 - Psyr_2631 0.26 +0.5
3,192,789 + Psyr_2631 0.28 +0.8
3,192,809 + Psyr_2631 0.28 -0.2
3,192,810 - Psyr_2631 0.28 +0.5
3,192,810 - Psyr_2631 0.28 -2.1
3,192,810 - Psyr_2631 0.28 +0.2
3,192,904 - Psyr_2631 0.32 +0.5
3,192,906 + Psyr_2631 0.32 -0.2
3,192,926 + Psyr_2631 0.33 -0.7
3,192,961 + Psyr_2631 0.34 +0.8
3,192,961 + Psyr_2631 0.34 +0.5
3,193,149 + Psyr_2631 0.41 +0.2
3,193,218 + Psyr_2631 0.43 +0.3
3,193,218 + Psyr_2631 0.43 +1.8
3,193,219 - Psyr_2631 0.44 -1.1
3,193,219 - Psyr_2631 0.44 -0.6
3,193,537 - Psyr_2631 0.55 -0.6
3,193,537 - Psyr_2631 0.55 -1.2
3,193,742 - Psyr_2631 0.63 +0.3
3,193,815 - Psyr_2631 0.66 -0.5
3,193,977 + Psyr_2631 0.72 -0.5
3,193,978 - Psyr_2631 0.72 -0.8
3,194,112 + Psyr_2631 0.77 -0.1
3,194,499 + +0.4
3,194,717 + -1.8
3,194,717 + -0.9
3,194,717 + -0.1
3,194,717 + -1.1
3,194,718 - -0.5
3,194,718 - +0.2
3,194,775 - +0.2
3,194,810 + +0.7
3,194,810 + -0.0
3,194,810 + +0.3
3,194,811 - +0.8
3,194,811 - -0.5
3,194,811 - -0.6
3,194,811 - +0.6
3,195,026 + -0.1
3,195,027 - -0.8
3,195,027 - +2.6
3,195,027 - +0.2
3,195,027 - -0.4
3,195,027 - +0.5
3,195,027 - +0.5
3,195,269 + Psyr_2632 0.17 -0.7
3,195,270 - Psyr_2632 0.17 +0.1
3,195,307 + Psyr_2632 0.18 -1.2
3,195,307 + Psyr_2632 0.18 -0.1
3,195,307 + Psyr_2632 0.18 -1.1
3,195,307 + Psyr_2632 0.18 +0.8
3,195,308 - Psyr_2632 0.18 -1.4
3,195,308 - Psyr_2632 0.18 +0.2
3,195,308 - Psyr_2632 0.18 -0.4
3,195,439 + Psyr_2632 0.22 +0.1
3,195,439 + -2.5
3,195,440 - Psyr_2632 0.22 -0.1
3,195,441 + Psyr_2632 0.22 -0.1
3,195,441 + Psyr_2632 0.22 -1.2
3,195,441 + Psyr_2632 0.22 +0.4
3,195,441 + Psyr_2632 0.22 +1.4
3,195,441 + Psyr_2632 0.22 -1.2
3,195,441 + Psyr_2632 0.22 -0.2
3,195,442 - Psyr_2632 0.22 -1.2
3,195,442 - Psyr_2632 0.22 +0.3
3,195,442 - Psyr_2632 0.22 -0.4
3,195,442 - Psyr_2632 0.22 +2.4
3,195,442 - Psyr_2632 0.22 -0.9
3,195,442 - Psyr_2632 0.22 +0.1
3,195,443 + Psyr_2632 0.22 -1.8
3,195,443 + Psyr_2632 0.22 -0.1
3,195,443 + Psyr_2632 0.22 +0.6
3,195,443 + Psyr_2632 0.22 +0.4
3,195,443 + Psyr_2632 0.22 -0.1
3,195,443 + Psyr_2632 0.22 -0.2
3,195,443 + Psyr_2632 0.22 +1.5
3,195,443 + Psyr_2632 0.22 -0.5
3,195,443 + Psyr_2632 0.22 -0.8
3,195,443 + Psyr_2632 0.22 +1.0
3,195,444 - Psyr_2632 0.22 -0.5
3,195,444 - Psyr_2632 0.22 +1.6
3,195,444 - Psyr_2632 0.22 -0.3
3,195,444 - Psyr_2632 0.22 -0.9
3,195,444 - Psyr_2632 0.22 +0.0
3,195,665 + Psyr_2632 0.30 -0.4
3,195,665 + Psyr_2632 0.30 +0.0
3,195,665 + Psyr_2632 0.30 -0.2

Or see this region's nucleotide sequence