Experiment: KB with capsaicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2603 and Psyr_2604 are separated by 245 nucleotides Psyr_2604 and Psyr_2605 are separated by 96 nucleotides
Psyr_2603: Psyr_2603 - Secretion protein HlyD, at 3,057,159 to 3,058,328
_2603
Psyr_2604: Psyr_2604 - conserved hypothetical protein; putative membrane protein, at 3,058,574 to 3,059,179
_2604
Psyr_2605: Psyr_2605 - transposase, putative, at 3,059,276 to 3,059,773
_2605
Position (kb)
3058
3059
3060 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3057.679 kb on + strand, within Psyr_2603 at 3057.679 kb on + strand, within Psyr_2603 at 3057.679 kb on + strand, within Psyr_2603 at 3057.679 kb on + strand, within Psyr_2603 at 3057.680 kb on - strand, within Psyr_2603 at 3057.680 kb on - strand, within Psyr_2603 at 3057.680 kb on - strand, within Psyr_2603 at 3057.680 kb on - strand, within Psyr_2603 at 3057.909 kb on + strand, within Psyr_2603 at 3057.910 kb on - strand, within Psyr_2603 at 3057.942 kb on + strand, within Psyr_2603 at 3057.942 kb on + strand, within Psyr_2603 at 3057.943 kb on - strand, within Psyr_2603 at 3057.943 kb on - strand, within Psyr_2603 at 3057.943 kb on - strand, within Psyr_2603 at 3057.943 kb on - strand, within Psyr_2603 at 3058.032 kb on + strand, within Psyr_2603 at 3058.032 kb on + strand, within Psyr_2603 at 3058.075 kb on - strand, within Psyr_2603 at 3058.075 kb on - strand, within Psyr_2603 at 3058.075 kb on - strand, within Psyr_2603 at 3058.075 kb on - strand, within Psyr_2603 at 3058.075 kb on - strand, within Psyr_2603 at 3058.075 kb on - strand, within Psyr_2603 at 3058.075 kb on - strand, within Psyr_2603 at 3058.075 kb on - strand, within Psyr_2603 at 3058.126 kb on + strand, within Psyr_2603 at 3058.127 kb on - strand, within Psyr_2603 at 3058.176 kb on + strand, within Psyr_2603 at 3058.176 kb on + strand, within Psyr_2603 at 3058.176 kb on + strand, within Psyr_2603 at 3058.177 kb on - strand, within Psyr_2603 at 3058.177 kb on - strand, within Psyr_2603 at 3058.177 kb on - strand, within Psyr_2603 at 3058.177 kb on - strand, within Psyr_2603 at 3058.183 kb on + strand, within Psyr_2603 at 3058.183 kb on + strand, within Psyr_2603 at 3058.183 kb on + strand, within Psyr_2603 at 3058.183 kb on + strand, within Psyr_2603 at 3058.184 kb on - strand, within Psyr_2603 at 3058.184 kb on - strand, within Psyr_2603 at 3058.221 kb on + strand at 3058.222 kb on - strand at 3058.222 kb on - strand at 3058.222 kb on - strand at 3058.222 kb on - strand at 3058.225 kb on + strand at 3058.261 kb on + strand at 3058.261 kb on + strand at 3058.275 kb on - strand at 3058.333 kb on - strand at 3058.346 kb on - strand at 3058.346 kb on - strand at 3058.423 kb on - strand at 3058.433 kb on + strand at 3058.433 kb on + strand at 3058.433 kb on + strand at 3058.445 kb on + strand at 3058.445 kb on + strand at 3058.445 kb on + strand at 3058.446 kb on - strand at 3058.446 kb on - strand at 3058.446 kb on - strand at 3058.446 kb on - strand at 3058.446 kb on - strand at 3058.499 kb on + strand at 3058.499 kb on + strand at 3058.528 kb on - strand at 3058.567 kb on - strand at 3058.583 kb on + strand at 3058.583 kb on + strand at 3058.583 kb on + strand at 3058.583 kb on + strand at 3058.583 kb on + strand at 3058.583 kb on + strand at 3058.583 kb on + strand at 3058.584 kb on - strand at 3058.584 kb on - strand at 3058.584 kb on - strand at 3058.584 kb on - strand at 3058.584 kb on - strand at 3058.586 kb on + strand at 3058.587 kb on - strand at 3058.675 kb on + strand, within Psyr_2604 at 3058.676 kb on - strand, within Psyr_2604 at 3058.715 kb on + strand, within Psyr_2604 at 3058.715 kb on + strand, within Psyr_2604 at 3058.715 kb on + strand, within Psyr_2604 at 3058.716 kb on - strand, within Psyr_2604 at 3058.716 kb on - strand, within Psyr_2604 at 3058.716 kb on - strand, within Psyr_2604 at 3058.769 kb on + strand, within Psyr_2604 at 3058.769 kb on + strand, within Psyr_2604 at 3058.769 kb on + strand, within Psyr_2604 at 3058.770 kb on - strand, within Psyr_2604 at 3058.820 kb on + strand, within Psyr_2604 at 3058.820 kb on + strand, within Psyr_2604 at 3058.820 kb on + strand, within Psyr_2604 at 3059.071 kb on - strand, within Psyr_2604 at 3059.148 kb on - strand at 3059.219 kb on - strand at 3059.222 kb on + strand at 3059.222 kb on + strand at 3059.222 kb on + strand at 3059.222 kb on + strand at 3059.223 kb on - strand at 3059.223 kb on - strand at 3059.223 kb on - strand at 3059.223 kb on - strand at 3059.226 kb on + strand at 3059.226 kb on + strand at 3059.226 kb on + strand at 3059.226 kb on + strand at 3059.226 kb on + strand at 3059.226 kb on + strand at 3059.226 kb on + strand at 3059.226 kb on + strand at 3059.227 kb on - strand at 3059.227 kb on - strand at 3059.227 kb on - strand at 3059.230 kb on + strand at 3059.230 kb on + strand at 3059.246 kb on + strand at 3059.246 kb on + strand at 3059.246 kb on + strand at 3059.246 kb on + strand at 3059.246 kb on + strand at 3059.246 kb on + strand at 3059.247 kb on - strand at 3059.247 kb on - strand at 3059.247 kb on - strand at 3059.247 kb on - strand at 3059.292 kb on + strand at 3059.292 kb on + strand at 3059.293 kb on - strand at 3059.293 kb on - strand at 3059.293 kb on - strand at 3059.293 kb on - strand at 3059.481 kb on + strand, within Psyr_2605 at 3059.481 kb on + strand, within Psyr_2605 at 3059.482 kb on - strand, within Psyr_2605 at 3059.482 kb on - strand, within Psyr_2605 at 3059.605 kb on + strand, within Psyr_2605 at 3059.605 kb on + strand, within Psyr_2605 at 3059.605 kb on + strand, within Psyr_2605 at 3059.606 kb on - strand, within Psyr_2605 at 3059.606 kb on - strand, within Psyr_2605 at 3059.656 kb on - strand, within Psyr_2605 at 3059.673 kb on + strand, within Psyr_2605 at 3059.674 kb on - strand, within Psyr_2605 at 3059.674 kb on - strand, within Psyr_2605 at 3059.752 kb on + strand at 3059.752 kb on + strand at 3059.752 kb on + strand at 3059.752 kb on + strand at 3059.752 kb on + strand at 3059.752 kb on + strand at 3059.753 kb on - strand at 3059.753 kb on - strand at 3059.772 kb on - strand at 3059.792 kb on + strand at 3059.793 kb on - strand at 3060.064 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml remove 3,057,679 + Psyr_2603 0.44 +0.5 3,057,679 + Psyr_2603 0.44 +0.5 3,057,679 + Psyr_2603 0.44 +2.0 3,057,679 + Psyr_2603 0.44 +0.0 3,057,680 - Psyr_2603 0.45 -0.6 3,057,680 - Psyr_2603 0.45 +0.1 3,057,680 - Psyr_2603 0.45 -0.8 3,057,680 - Psyr_2603 0.45 -1.4 3,057,909 + Psyr_2603 0.64 -1.5 3,057,910 - Psyr_2603 0.64 -0.5 3,057,942 + Psyr_2603 0.67 +1.5 3,057,942 + Psyr_2603 0.67 -1.1 3,057,943 - Psyr_2603 0.67 -0.7 3,057,943 - Psyr_2603 0.67 +0.0 3,057,943 - Psyr_2603 0.67 -0.8 3,057,943 - Psyr_2603 0.67 +0.2 3,058,032 + Psyr_2603 0.75 -1.0 3,058,032 + Psyr_2603 0.75 -0.4 3,058,075 - Psyr_2603 0.78 -0.8 3,058,075 - Psyr_2603 0.78 +1.5 3,058,075 - Psyr_2603 0.78 -0.0 3,058,075 - Psyr_2603 0.78 +0.2 3,058,075 - Psyr_2603 0.78 -0.7 3,058,075 - Psyr_2603 0.78 +0.4 3,058,075 - Psyr_2603 0.78 +0.3 3,058,075 - Psyr_2603 0.78 +0.6 3,058,126 + Psyr_2603 0.83 -1.3 3,058,127 - Psyr_2603 0.83 +1.1 3,058,176 + Psyr_2603 0.87 -0.1 3,058,176 + Psyr_2603 0.87 -0.8 3,058,176 + Psyr_2603 0.87 +2.1 3,058,177 - Psyr_2603 0.87 +2.4 3,058,177 - Psyr_2603 0.87 -0.6 3,058,177 - Psyr_2603 0.87 +0.9 3,058,177 - Psyr_2603 0.87 +0.4 3,058,183 + Psyr_2603 0.88 +0.2 3,058,183 + Psyr_2603 0.88 -1.9 3,058,183 + Psyr_2603 0.88 -1.1 3,058,183 + Psyr_2603 0.88 +0.8 3,058,184 - Psyr_2603 0.88 +1.1 3,058,184 - Psyr_2603 0.88 -1.2 3,058,221 + +1.5 3,058,222 - +1.8 3,058,222 - +0.8 3,058,222 - +1.8 3,058,222 - +0.0 3,058,225 + -0.4 3,058,261 + +1.4 3,058,261 + +3.8 3,058,275 - +0.2 3,058,333 - +2.8 3,058,346 - -0.4 3,058,346 - -2.4 3,058,423 - -1.2 3,058,433 + -0.4 3,058,433 + -1.5 3,058,433 + +1.6 3,058,445 + -1.2 3,058,445 + -1.1 3,058,445 + -0.9 3,058,446 - -1.2 3,058,446 - -2.2 3,058,446 - +0.2 3,058,446 - -0.1 3,058,446 - -1.0 3,058,499 + -0.8 3,058,499 + +0.8 3,058,528 - -0.2 3,058,567 - +0.8 3,058,583 + +0.6 3,058,583 + +2.4 3,058,583 + -1.1 3,058,583 + -0.1 3,058,583 + -0.1 3,058,583 + -0.9 3,058,583 + +1.9 3,058,584 - -2.4 3,058,584 - +0.3 3,058,584 - -1.0 3,058,584 - -0.7 3,058,584 - -0.2 3,058,586 + +0.0 3,058,587 - -2.0 3,058,675 + Psyr_2604 0.17 -0.4 3,058,676 - Psyr_2604 0.17 +2.0 3,058,715 + Psyr_2604 0.23 +1.3 3,058,715 + Psyr_2604 0.23 -0.6 3,058,715 + Psyr_2604 0.23 +0.2 3,058,716 - Psyr_2604 0.23 -0.6 3,058,716 - Psyr_2604 0.23 -1.0 3,058,716 - Psyr_2604 0.23 +0.2 3,058,769 + Psyr_2604 0.32 +1.0 3,058,769 + Psyr_2604 0.32 +1.2 3,058,769 + Psyr_2604 0.32 +1.3 3,058,770 - Psyr_2604 0.32 -0.3 3,058,820 + Psyr_2604 0.41 +1.3 3,058,820 + Psyr_2604 0.41 +0.5 3,058,820 + Psyr_2604 0.41 -1.4 3,059,071 - Psyr_2604 0.82 +1.4 3,059,148 - -1.0 3,059,219 - -0.6 3,059,222 + +0.3 3,059,222 + +0.6 3,059,222 + -0.5 3,059,222 + -0.3 3,059,223 - -1.5 3,059,223 - +0.1 3,059,223 - +1.2 3,059,223 - -0.2 3,059,226 + -0.5 3,059,226 + -0.2 3,059,226 + +2.5 3,059,226 + -0.1 3,059,226 + +0.1 3,059,226 + -0.4 3,059,226 + +1.8 3,059,226 + -0.2 3,059,227 - -0.4 3,059,227 - +1.8 3,059,227 - -0.1 3,059,230 + -0.8 3,059,230 + +0.6 3,059,246 + -0.8 3,059,246 + -1.1 3,059,246 + +1.3 3,059,246 + -0.9 3,059,246 + -0.3 3,059,246 + -0.4 3,059,247 - -0.3 3,059,247 - -1.2 3,059,247 - +1.6 3,059,247 - -0.5 3,059,292 + +0.0 3,059,292 + -0.2 3,059,293 - -0.1 3,059,293 - +0.2 3,059,293 - -1.7 3,059,293 - +1.3 3,059,481 + Psyr_2605 0.41 -1.2 3,059,481 + Psyr_2605 0.41 +0.8 3,059,482 - Psyr_2605 0.41 +0.9 3,059,482 - Psyr_2605 0.41 -0.0 3,059,605 + Psyr_2605 0.66 -0.6 3,059,605 + Psyr_2605 0.66 +0.6 3,059,605 + Psyr_2605 0.66 -0.0 3,059,606 - Psyr_2605 0.66 +0.4 3,059,606 - Psyr_2605 0.66 -0.0 3,059,656 - Psyr_2605 0.76 +1.7 3,059,673 + Psyr_2605 0.80 +1.8 3,059,674 - Psyr_2605 0.80 -0.7 3,059,674 - Psyr_2605 0.80 +0.1 3,059,752 + +0.4 3,059,752 + -0.0 3,059,752 + +2.6 3,059,752 + +1.1 3,059,752 + -0.3 3,059,752 + +0.8 3,059,753 - -0.7 3,059,753 - +0.8 3,059,772 - +0.8 3,059,792 + +0.1 3,059,793 - -1.8 3,060,064 - -0.2
Or see this region's nucleotide sequence