Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2604

Experiment: KB with capsaicin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.125 mg/ml
3,057,679	+		Psyr_2603	0.44	+0.5
3,057,679	+		Psyr_2603	0.44	+0.5
3,057,679	+		Psyr_2603	0.44	+2.0
3,057,679	+		Psyr_2603	0.44	+0.0
3,057,680	-		Psyr_2603	0.45	-0.6
3,057,680	-		Psyr_2603	0.45	+0.1
3,057,680	-		Psyr_2603	0.45	-0.8
3,057,680	-		Psyr_2603	0.45	-1.4
3,057,909	+		Psyr_2603	0.64	-1.5
3,057,910	-		Psyr_2603	0.64	-0.5
3,057,942	+		Psyr_2603	0.67	+1.5
3,057,942	+		Psyr_2603	0.67	-1.1
3,057,943	-		Psyr_2603	0.67	-0.7
3,057,943	-		Psyr_2603	0.67	+0.0
3,057,943	-		Psyr_2603	0.67	-0.8
3,057,943	-		Psyr_2603	0.67	+0.2
3,058,032	+		Psyr_2603	0.75	-1.0
3,058,032	+		Psyr_2603	0.75	-0.4
3,058,075	-		Psyr_2603	0.78	-0.8
3,058,075	-		Psyr_2603	0.78	+1.5
3,058,075	-		Psyr_2603	0.78	-0.0
3,058,075	-		Psyr_2603	0.78	+0.2
3,058,075	-		Psyr_2603	0.78	-0.7
3,058,075	-		Psyr_2603	0.78	+0.4
3,058,075	-		Psyr_2603	0.78	+0.3
3,058,075	-		Psyr_2603	0.78	+0.6
3,058,126	+		Psyr_2603	0.83	-1.3
3,058,127	-		Psyr_2603	0.83	+1.1
3,058,176	+		Psyr_2603	0.87	-0.1
3,058,176	+		Psyr_2603	0.87	-0.8
3,058,176	+		Psyr_2603	0.87	+2.1
3,058,177	-		Psyr_2603	0.87	+2.4
3,058,177	-		Psyr_2603	0.87	-0.6
3,058,177	-		Psyr_2603	0.87	+0.9
3,058,177	-		Psyr_2603	0.87	+0.4
3,058,183	+		Psyr_2603	0.88	+0.2
3,058,183	+		Psyr_2603	0.88	-1.9
3,058,183	+		Psyr_2603	0.88	-1.1
3,058,183	+		Psyr_2603	0.88	+0.8
3,058,184	-		Psyr_2603	0.88	+1.1
3,058,184	-		Psyr_2603	0.88	-1.2
3,058,221	+				+1.5
3,058,222	-				+1.8
3,058,222	-				+0.8
3,058,222	-				+1.8
3,058,222	-				+0.0
3,058,225	+				-0.4
3,058,261	+				+1.4
3,058,261	+				+3.8
3,058,275	-				+0.2
3,058,333	-				+2.8
3,058,346	-				-0.4
3,058,346	-				-2.4
3,058,423	-				-1.2
3,058,433	+				-0.4
3,058,433	+				-1.5
3,058,433	+				+1.6
3,058,445	+				-1.2
3,058,445	+				-1.1
3,058,445	+				-0.9
3,058,446	-				-1.2
3,058,446	-				-2.2
3,058,446	-				+0.2
3,058,446	-				-0.1
3,058,446	-				-1.0
3,058,499	+				-0.8
3,058,499	+				+0.8
3,058,528	-				-0.2
3,058,567	-				+0.8
3,058,583	+				+0.6
3,058,583	+				+2.4
3,058,583	+				-1.1
3,058,583	+				-0.1
3,058,583	+				-0.1
3,058,583	+				-0.9
3,058,583	+				+1.9
3,058,584	-				-2.4
3,058,584	-				+0.3
3,058,584	-				-1.0
3,058,584	-				-0.7
3,058,584	-				-0.2
3,058,586	+				+0.0
3,058,587	-				-2.0
3,058,675	+		Psyr_2604	0.17	-0.4
3,058,676	-		Psyr_2604	0.17	+2.0
3,058,715	+		Psyr_2604	0.23	+1.3
3,058,715	+		Psyr_2604	0.23	-0.6
3,058,715	+		Psyr_2604	0.23	+0.2
3,058,716	-		Psyr_2604	0.23	-0.6
3,058,716	-		Psyr_2604	0.23	-1.0
3,058,716	-		Psyr_2604	0.23	+0.2
3,058,769	+		Psyr_2604	0.32	+1.0
3,058,769	+		Psyr_2604	0.32	+1.2
3,058,769	+		Psyr_2604	0.32	+1.3
3,058,770	-		Psyr_2604	0.32	-0.3
3,058,820	+		Psyr_2604	0.41	+1.3
3,058,820	+		Psyr_2604	0.41	+0.5
3,058,820	+		Psyr_2604	0.41	-1.4
3,059,071	-		Psyr_2604	0.82	+1.4
3,059,148	-				-1.0
3,059,219	-				-0.6
3,059,222	+				+0.3
3,059,222	+				+0.6
3,059,222	+				-0.5
3,059,222	+				-0.3
3,059,223	-				-1.5
3,059,223	-				+0.1
3,059,223	-				+1.2
3,059,223	-				-0.2
3,059,226	+				-0.5
3,059,226	+				-0.2
3,059,226	+				+2.5
3,059,226	+				-0.1
3,059,226	+				+0.1
3,059,226	+				-0.4
3,059,226	+				+1.8
3,059,226	+				-0.2
3,059,227	-				-0.4
3,059,227	-				+1.8
3,059,227	-				-0.1
3,059,230	+				-0.8
3,059,230	+				+0.6
3,059,246	+				-0.8
3,059,246	+				-1.1
3,059,246	+				+1.3
3,059,246	+				-0.9
3,059,246	+				-0.3
3,059,246	+				-0.4
3,059,247	-				-0.3
3,059,247	-				-1.2
3,059,247	-				+1.6
3,059,247	-				-0.5
3,059,292	+				+0.0
3,059,292	+				-0.2
3,059,293	-				-0.1
3,059,293	-				+0.2
3,059,293	-				-1.7
3,059,293	-				+1.3
3,059,481	+		Psyr_2605	0.41	-1.2
3,059,481	+		Psyr_2605	0.41	+0.8
3,059,482	-		Psyr_2605	0.41	+0.9
3,059,482	-		Psyr_2605	0.41	-0.0
3,059,605	+		Psyr_2605	0.66	-0.6
3,059,605	+		Psyr_2605	0.66	+0.6
3,059,605	+		Psyr_2605	0.66	-0.0
3,059,606	-		Psyr_2605	0.66	+0.4
3,059,606	-		Psyr_2605	0.66	-0.0
3,059,656	-		Psyr_2605	0.76	+1.7
3,059,673	+		Psyr_2605	0.80	+1.8
3,059,674	-		Psyr_2605	0.80	-0.7
3,059,674	-		Psyr_2605	0.80	+0.1
3,059,752	+				+0.4
3,059,752	+				-0.0
3,059,752	+				+2.6
3,059,752	+				+1.1
3,059,752	+				-0.3
3,059,752	+				+0.8
3,059,753	-				-0.7
3,059,753	-				+0.8
3,059,772	-				+0.8
3,059,792	+				+0.1
3,059,793	-				-1.8
3,060,064	-				-0.2