Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2578

Experiment: KB with capsaicin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.125 mg/ml
3,018,918	+				+0.9
3,018,918	+				-0.8
3,019,129	+				+0.8
3,019,129	+				-0.2
3,019,130	-				+0.5
3,019,130	-				-1.4
3,019,130	-				+1.8
3,019,130	-				+2.1
3,019,130	-				-1.2
3,019,130	-				-1.2
3,019,130	-				+1.3
3,019,130	-				-1.7
3,019,355	+		Psyr_2578	0.38	-0.6
3,019,356	-		Psyr_2578	0.38	-2.0
3,019,489	-		Psyr_2578	0.58	+1.0
3,019,495	-		Psyr_2578	0.59	-1.3
3,019,500	-		Psyr_2578	0.59	-0.9
3,019,749	+				-0.8
3,019,750	-				+0.8
3,019,765	+				-0.2
3,019,765	+				+1.3
3,019,765	+				+0.3
3,019,766	-				-1.8
3,019,766	-				-2.7
3,019,766	-				-1.8
3,019,766	-				+1.3
3,019,801	+				+0.0
3,019,811	-				+0.5
3,019,811	-				-2.1
3,019,867	+				+0.2
3,019,868	-				-0.7
3,019,927	+				-0.2
3,019,927	+				+0.1
3,019,927	+				-1.4
3,019,928	-				+2.3
3,019,931	+				-0.2
3,019,931	+				-2.2
3,019,931	+				-1.8
3,020,044	+				+1.0
3,020,045	-				-0.2
3,020,659	-		Psyr_2579	0.38	-1.6
3,020,659	-		Psyr_2579	0.38	-0.2
3,020,659	-		Psyr_2579	0.38	-1.6
3,020,765	+		Psyr_2579	0.45	-0.6
3,020,765	+		Psyr_2579	0.45	-1.4
3,020,765	+		Psyr_2579	0.45	-0.2
3,020,766	-		Psyr_2579	0.45	+0.1
3,020,766	-		Psyr_2579	0.45	+0.3