Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2344

Experiment: KB with capsaicin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2342 and Psyr_2343 are separated by 70 nucleotidesPsyr_2343 and Psyr_2344 are separated by 56 nucleotidesPsyr_2344 and Psyr_2345 are separated by 435 nucleotides Psyr_2342: Psyr_2342 - CBS:Transporter-associated region:Integral membrane protein TerC, at 2,718,182 to 2,719,750 _2342 Psyr_2343: Psyr_2343 - GCN5-related N-acetyltransferase, at 2,719,821 to 2,720,396 _2343 Psyr_2344: Psyr_2344 - CDS, at 2,720,453 to 2,720,707 _2344 Psyr_2345: Psyr_2345 - ea59 protein, at 2,721,143 to 2,722,693 _2345 Position (kb) 2720 2721Strain fitness (log2 ratio) -2 -1 0 1 2at 2719.586 kb on + strand, within Psyr_2342at 2719.587 kb on - strand, within Psyr_2342at 2719.671 kb on + strandat 2719.671 kb on + strandat 2719.671 kb on + strandat 2719.672 kb on - strandat 2719.672 kb on - strandat 2719.672 kb on - strandat 2719.748 kb on + strandat 2719.748 kb on + strandat 2719.748 kb on + strandat 2719.748 kb on + strandat 2719.749 kb on - strandat 2719.749 kb on - strandat 2719.749 kb on - strandat 2719.749 kb on - strandat 2719.749 kb on - strandat 2719.749 kb on - strandat 2719.966 kb on + strand, within Psyr_2343at 2720.001 kb on + strand, within Psyr_2343at 2720.001 kb on + strand, within Psyr_2343at 2720.001 kb on + strand, within Psyr_2343at 2720.001 kb on + strand, within Psyr_2343at 2720.002 kb on - strand, within Psyr_2343at 2720.002 kb on - strand, within Psyr_2343at 2720.148 kb on + strand, within Psyr_2343at 2720.148 kb on + strand, within Psyr_2343at 2720.148 kb on + strand, within Psyr_2343at 2720.148 kb on + strand, within Psyr_2343at 2720.148 kb on + strand, within Psyr_2343at 2720.148 kb on + strand, within Psyr_2343at 2720.148 kb on + strand, within Psyr_2343at 2720.149 kb on - strand, within Psyr_2343at 2720.149 kb on - strand, within Psyr_2343at 2720.149 kb on - strand, within Psyr_2343at 2720.149 kb on - strand, within Psyr_2343at 2720.149 kb on - strand, within Psyr_2343at 2720.149 kb on - strand, within Psyr_2343at 2720.149 kb on - strand, within Psyr_2343at 2720.150 kb on + strand, within Psyr_2343at 2720.150 kb on + strand, within Psyr_2343at 2720.150 kb on + strand, within Psyr_2343at 2720.150 kb on + strand, within Psyr_2343at 2720.150 kb on + strand, within Psyr_2343at 2720.150 kb on + strand, within Psyr_2343at 2720.150 kb on + strand, within Psyr_2343at 2720.150 kb on + strand, within Psyr_2343at 2720.151 kb on - strand, within Psyr_2343at 2720.151 kb on - strand, within Psyr_2343at 2720.151 kb on - strand, within Psyr_2343at 2720.151 kb on - strand, within Psyr_2343at 2720.151 kb on - strand, within Psyr_2343at 2720.151 kb on - strand, within Psyr_2343at 2720.151 kb on - strand, within Psyr_2343at 2720.152 kb on + strand, within Psyr_2343at 2720.152 kb on + strand, within Psyr_2343at 2720.152 kb on + strand, within Psyr_2343at 2720.152 kb on + strand, within Psyr_2343at 2720.152 kb on + strand, within Psyr_2343at 2720.152 kb on + strand, within Psyr_2343at 2720.152 kb on + strand, within Psyr_2343at 2720.152 kb on + strand, within Psyr_2343at 2720.153 kb on - strand, within Psyr_2343at 2720.153 kb on - strand, within Psyr_2343at 2720.206 kb on + strand, within Psyr_2343at 2720.206 kb on + strand, within Psyr_2343at 2720.206 kb on + strand, within Psyr_2343at 2720.206 kb on + strand, within Psyr_2343at 2720.207 kb on - strand, within Psyr_2343at 2720.207 kb on - strand, within Psyr_2343at 2720.312 kb on - strand, within Psyr_2343at 2720.435 kb on + strandat 2720.435 kb on + strandat 2720.435 kb on + strandat 2720.436 kb on - strandat 2720.440 kb on + strandat 2720.440 kb on + strandat 2720.454 kb on + strandat 2720.520 kb on + strand, within Psyr_2344at 2720.521 kb on - strand, within Psyr_2344at 2720.521 kb on - strand, within Psyr_2344at 2720.521 kb on - strand, within Psyr_2344at 2720.534 kb on + strand, within Psyr_2344at 2720.535 kb on - strand, within Psyr_2344at 2720.535 kb on - strand, within Psyr_2344at 2720.836 kb on - strandat 2720.854 kb on + strandat 2720.866 kb on + strandat 2720.951 kb on + strandat 2720.994 kb on + strandat 2720.995 kb on - strandat 2721.010 kb on - strandat 2721.101 kb on + strandat 2721.102 kb on - strandat 2721.209 kb on + strandat 2721.321 kb on + strand, within Psyr_2345at 2721.322 kb on - strand, within Psyr_2345at 2721.353 kb on - strand, within Psyr_2345at 2721.510 kb on + strand, within Psyr_2345at 2721.572 kb on + strand, within Psyr_2345at 2721.573 kb on - strand, within Psyr_2345at 2721.622 kb on + strand, within Psyr_2345

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml
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2,719,586 + Psyr_2342 0.89 -0.2
2,719,587 - Psyr_2342 0.90 +1.2
2,719,671 + +0.2
2,719,671 + +0.4
2,719,671 + +0.2
2,719,672 - -0.6
2,719,672 - -0.3
2,719,672 - +0.2
2,719,748 + -0.0
2,719,748 + -0.6
2,719,748 + -0.3
2,719,748 + -1.0
2,719,749 - -0.7
2,719,749 - +0.2
2,719,749 - -1.2
2,719,749 - +1.8
2,719,749 - +1.4
2,719,749 - -0.5
2,719,966 + Psyr_2343 0.25 +1.3
2,720,001 + Psyr_2343 0.31 -0.4
2,720,001 + Psyr_2343 0.31 -0.6
2,720,001 + Psyr_2343 0.31 -2.6
2,720,001 + Psyr_2343 0.31 -1.2
2,720,002 - Psyr_2343 0.31 +0.8
2,720,002 - Psyr_2343 0.31 -0.1
2,720,148 + Psyr_2343 0.57 -0.2
2,720,148 + Psyr_2343 0.57 +0.2
2,720,148 + Psyr_2343 0.57 +0.9
2,720,148 + Psyr_2343 0.57 -0.2
2,720,148 + Psyr_2343 0.57 -0.7
2,720,148 + Psyr_2343 0.57 +0.8
2,720,148 + Psyr_2343 0.57 -0.5
2,720,149 - Psyr_2343 0.57 +0.1
2,720,149 - Psyr_2343 0.57 +0.6
2,720,149 - Psyr_2343 0.57 +0.8
2,720,149 - Psyr_2343 0.57 -0.8
2,720,149 - Psyr_2343 0.57 -0.4
2,720,149 - Psyr_2343 0.57 +0.1
2,720,149 - Psyr_2343 0.57 -0.4
2,720,150 + Psyr_2343 0.57 +0.1
2,720,150 + Psyr_2343 0.57 +0.6
2,720,150 + Psyr_2343 0.57 -0.8
2,720,150 + Psyr_2343 0.57 -0.8
2,720,150 + Psyr_2343 0.57 +1.1
2,720,150 + Psyr_2343 0.57 -0.8
2,720,150 + Psyr_2343 0.57 +1.1
2,720,150 + Psyr_2343 0.57 -1.6
2,720,151 - Psyr_2343 0.57 -0.5
2,720,151 - Psyr_2343 0.57 -0.7
2,720,151 - Psyr_2343 0.57 +0.8
2,720,151 - Psyr_2343 0.57 +0.8
2,720,151 - Psyr_2343 0.57 +2.1
2,720,151 - Psyr_2343 0.57 +0.5
2,720,151 - Psyr_2343 0.57 +0.3
2,720,152 + Psyr_2343 0.57 +0.5
2,720,152 + Psyr_2343 0.57 -0.2
2,720,152 + Psyr_2343 0.57 +1.5
2,720,152 + Psyr_2343 0.57 +0.5
2,720,152 + Psyr_2343 0.57 -0.5
2,720,152 + Psyr_2343 0.57 +0.1
2,720,152 + Psyr_2343 0.57 -0.6
2,720,152 + Psyr_2343 0.57 +0.8
2,720,153 - Psyr_2343 0.58 +0.3
2,720,153 - Psyr_2343 0.58 +0.6
2,720,206 + Psyr_2343 0.67 -1.6
2,720,206 + Psyr_2343 0.67 +1.2
2,720,206 + Psyr_2343 0.67 -2.0
2,720,206 + Psyr_2343 0.67 +0.2
2,720,207 - Psyr_2343 0.67 -1.0
2,720,207 - Psyr_2343 0.67 +1.1
2,720,312 - Psyr_2343 0.85 -0.4
2,720,435 + +0.8
2,720,435 + -0.7
2,720,435 + -0.1
2,720,436 - +2.3
2,720,440 + -0.6
2,720,440 + -0.3
2,720,454 + -0.7
2,720,520 + Psyr_2344 0.26 +0.8
2,720,521 - Psyr_2344 0.27 -0.7
2,720,521 - Psyr_2344 0.27 -0.5
2,720,521 - Psyr_2344 0.27 -0.0
2,720,534 + Psyr_2344 0.32 -0.8
2,720,535 - Psyr_2344 0.32 -2.0
2,720,535 - Psyr_2344 0.32 -0.6
2,720,836 - -0.7
2,720,854 + -2.0
2,720,866 + -1.7
2,720,951 + +0.4
2,720,994 + -0.2
2,720,995 - -1.0
2,721,010 - -1.6
2,721,101 + -0.1
2,721,102 - -0.5
2,721,209 + -1.6
2,721,321 + Psyr_2345 0.11 +1.6
2,721,322 - Psyr_2345 0.12 -1.2
2,721,353 - Psyr_2345 0.14 +0.0
2,721,510 + Psyr_2345 0.24 -0.4
2,721,572 + Psyr_2345 0.28 -1.7
2,721,573 - Psyr_2345 0.28 +0.4
2,721,622 + Psyr_2345 0.31 +0.2

Or see this region's nucleotide sequence