Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2151

Experiment: KB with capsaicin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.125 mg/ml
2,505,694	+		Psyr_2148	0.77	-1.2
2,505,694	+		Psyr_2148	0.77	-1.0
2,505,695	-		Psyr_2148	0.78	-0.3
2,505,695	-		Psyr_2148	0.78	-0.2
2,505,709	+		Psyr_2148	0.80	+0.8
2,505,733	+		Psyr_2148	0.83	+0.6
2,505,734	-		Psyr_2148	0.83	-0.9
2,505,734	-		Psyr_2148	0.83	-0.6
2,505,734	-		Psyr_2148	0.83	+0.3
2,505,734	-		Psyr_2148	0.83	+0.3
2,505,937	+		Psyr_2149	0.32	-2.7
2,506,175	+				-0.6
2,506,175	+				+0.3
2,506,175	+				-0.1
2,506,175	+				+1.1
2,506,175	+				-1.1
2,506,175	+				+0.1
2,506,175	+				+0.3
2,506,175	+				-0.4
2,506,175	+				+0.0
2,506,175	+				-0.8
2,506,175	+				-1.0
2,506,176	-				+0.3
2,506,176	-				-1.8
2,506,176	-				+0.3
2,506,176	-				-0.4
2,506,176	-				-1.2
2,506,176	-				+0.1
2,506,176	-				+0.1
2,506,176	-				+1.8
2,506,176	-				-0.2
2,506,176	-				-0.2
2,506,176	-				+1.2
2,506,176	-				-1.4
2,506,176	-				+0.4
2,506,176	-				-1.6
2,506,179	+				-0.5
2,506,179	+				+2.8
2,506,179	+				+1.8
2,506,179	+				+0.0
2,506,179	+				+0.3
2,506,179	+				+0.2
2,506,180	-				+0.6
2,506,180	-				+1.0
2,506,180	-				-0.7
2,506,180	-				-0.2
2,506,180	-				+0.8
2,506,180	-				-0.3
2,506,185	-				+0.8
2,506,251	-				-2.1
2,506,347	+		Psyr_2150	0.45	+1.2
2,506,347	+		Psyr_2150	0.45	-1.5
2,506,361	+		Psyr_2150	0.52	-2.1
2,506,361	+		Psyr_2150	0.52	-1.7
2,506,362	-		Psyr_2150	0.52	+0.3
2,506,406	+		Psyr_2150	0.72	+0.5
2,506,528	-				+1.8
2,506,532	-				-2.1
2,506,639	-				+0.1
2,506,639	-				+1.5
2,506,744	+				-0.3
2,507,134	+		Psyr_2151	0.49	-0.7
2,507,434	+		Psyr_2151	0.80	-0.6
2,507,611	-				+2.3
2,507,634	+				+0.1
2,507,675	+				-1.3
2,507,675	+				+0.4
2,507,675	+				-2.0
2,507,675	+				-1.9
2,507,676	-				+1.0
2,507,676	-				+1.0
2,507,676	-				-0.2
2,507,676	-				+0.8
2,507,676	-				-0.6
2,507,676	-				-0.2
2,507,676	-				+0.4
2,507,676	-				-0.1
2,507,730	+				-1.7
2,507,730	+				-0.2
2,507,731	-				-0.6
2,507,814	-				+0.2
2,507,855	+		Psyr_2152	0.12	+0.4
2,508,172	+		Psyr_2152	0.32	-1.4
2,508,172	+				-0.8
2,508,172	+		Psyr_2152	0.32	+0.8
2,508,173	-		Psyr_2152	0.32	+1.1
2,508,273	+		Psyr_2152	0.38	-0.9
2,508,273	+		Psyr_2152	0.38	+0.6
2,508,273	+		Psyr_2152	0.38	+2.1
2,508,273	+		Psyr_2152	0.38	+0.5
2,508,273	+		Psyr_2152	0.38	-0.6
2,508,273	+		Psyr_2152	0.38	+0.5
2,508,273	+		Psyr_2152	0.38	+0.5
2,508,273	+				+1.8
2,508,273	+		Psyr_2152	0.38	-1.2
2,508,274	-		Psyr_2152	0.38	+0.7
2,508,274	-		Psyr_2152	0.38	+0.0
2,508,274	-		Psyr_2152	0.38	-0.6
2,508,274	-		Psyr_2152	0.38	-1.1
2,508,274	-		Psyr_2152	0.38	-0.7
2,508,274	-		Psyr_2152	0.38	-0.8
2,508,370	-		Psyr_2152	0.45	+1.3
2,508,422	+		Psyr_2152	0.48	+0.8
2,508,586	-		Psyr_2152	0.59	+0.8