Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2134

Experiment: KB with capsaicin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.125 mg/ml
2,493,185	-				+1.3
2,493,185	-				+0.9
2,493,247	-				+0.5
2,493,247	-				+1.4
2,493,253	+		Psyr_2133	0.11	+0.8
2,493,253	+		Psyr_2133	0.11	-1.8
2,493,253	+		Psyr_2133	0.11	-1.2
2,493,254	-		Psyr_2133	0.11	-0.7
2,493,254	-		Psyr_2133	0.11	+0.3
2,493,254	-		Psyr_2133	0.11	-3.1
2,493,254	-		Psyr_2133	0.11	+0.9
2,493,421	+		Psyr_2133	0.28	-1.6
2,493,541	+		Psyr_2133	0.41	-0.9
2,493,541	+		Psyr_2133	0.41	-0.7
2,493,542	-		Psyr_2133	0.41	+0.8
2,493,594	+		Psyr_2133	0.47	+0.9
2,493,595	-		Psyr_2133	0.47	-0.4
2,493,595	-		Psyr_2133	0.47	+1.1
2,493,595	-		Psyr_2133	0.47	+0.1
2,493,674	-		Psyr_2133	0.55	-1.7
2,493,917	+		Psyr_2133	0.81	+0.1
2,493,918	-		Psyr_2133	0.81	-0.7
2,493,918	-		Psyr_2133	0.81	+0.3
2,493,918	-		Psyr_2133	0.81	-0.9
2,493,918	-		Psyr_2133	0.81	+0.9
2,494,097	-				-1.2
2,494,190	+				-0.4
2,494,190	+				-0.6
2,494,191	-				+0.8
2,494,194	+				-0.7
2,494,194	+				+0.2
2,494,195	-				+0.1
2,494,195	-				+1.2
2,494,268	-		Psyr_2134	0.42	+0.8
2,494,268	-		Psyr_2134	0.42	-1.1
2,494,398	+				-2.7
2,494,466	-				-0.5
2,494,467	+				+0.5
2,494,467	+				-0.2
2,494,676	+		Psyr_2135	0.30	+1.2
2,494,677	-		Psyr_2135	0.30	+0.6
2,494,680	+		Psyr_2135	0.31	-0.8
2,494,785	+		Psyr_2135	0.48	-0.2
2,494,785	+		Psyr_2135	0.48	+0.5
2,494,842	+		Psyr_2135	0.57	-1.8
2,494,842	+		Psyr_2135	0.57	-0.4
2,494,843	-		Psyr_2135	0.58	-0.4
2,494,843	-		Psyr_2135	0.58	+0.8
2,495,066	+				+1.5
2,495,066	+				-0.8
2,495,067	-				-0.4
2,495,136	+				+0.8
2,495,136	+				-0.3
2,495,136	+				-0.8
2,495,136	+				-0.2
2,495,137	-				+0.3
2,495,137	-				+0.5
2,495,137	-				-0.3
2,495,138	+				-0.8
2,495,138	+				+1.3
2,495,139	-				-0.4
2,495,139	-				+0.4
2,495,139	-				+0.9
2,495,139	-				-1.9
2,495,139	-				+0.1
2,495,139	-				-0.3
2,495,204	-				-1.1
2,495,210	+				-1.2
2,495,210	+				+0.8
2,495,211	-				-0.2
2,495,211	-				+0.6
2,495,341	-		Psyr_2136	0.31	-0.2