Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2080

Experiment: KB with capsaicin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.125 mg/ml
2,424,029	-				+0.7
2,424,189	+				+1.0
2,424,189	+				-1.5
2,424,269	+		Psyr_2079	0.18	-1.8
2,424,269	+		Psyr_2079	0.18	+0.2
2,424,434	+		Psyr_2079	0.45	-0.6
2,424,435	-		Psyr_2079	0.45	+0.2
2,424,584	+		Psyr_2079	0.69	+0.2
2,424,584	+		Psyr_2079	0.69	-0.6
2,424,585	-		Psyr_2079	0.70	-0.1
2,424,588	-		Psyr_2079	0.70	-1.5
2,424,614	+		Psyr_2079	0.74	+0.4
2,424,712	+				+1.3
2,424,712	+				+0.7
2,424,712	+				+0.6
2,424,712	+				+0.7
2,425,085	+		Psyr_2080	0.13	-3.0
2,425,085	+		Psyr_2080	0.13	-0.3
2,425,085	+		Psyr_2080	0.13	-0.9
2,425,085	+		Psyr_2080	0.13	-1.7
2,425,086	-		Psyr_2080	0.13	-2.1
2,425,086	-		Psyr_2080	0.13	-1.0
2,425,086	-		Psyr_2080	0.13	-0.3
2,425,086	-		Psyr_2080	0.13	-0.7
2,425,104	-		Psyr_2080	0.15	-1.0
2,425,668	-		Psyr_2080	0.57	-1.3
2,425,668	-		Psyr_2080	0.57	-0.7
2,425,668	-		Psyr_2080	0.57	-2.9
2,425,697	+		Psyr_2080	0.59	-1.4
2,425,698	-		Psyr_2080	0.59	-1.7
2,425,955	+		Psyr_2080	0.78	-1.6
2,425,955	+		Psyr_2080	0.78	-0.4
2,426,008	+		Psyr_2080	0.82	-2.3
2,426,009	-		Psyr_2080	0.82	-2.1
2,426,009	-		Psyr_2080	0.82	-0.5
2,426,057	+		Psyr_2080	0.86	-1.9
2,426,057	+		Psyr_2080	0.86	-0.8
2,426,233	+				-2.4
2,426,288	+				-1.9
2,426,289	-				-0.8
2,426,289	-				+1.3
2,426,317	+				+0.1
2,426,318	-				+0.4
2,426,318	-				-1.0
2,426,318	-				-1.0
2,426,318	-				-0.7
2,426,573	+		Psyr_2081	0.25	+0.0
2,426,574	-		Psyr_2081	0.25	-1.1
2,426,610	+		Psyr_2081	0.29	+0.5
2,426,611	-		Psyr_2081	0.29	+0.3
2,426,838	-		Psyr_2081	0.52	-0.4
2,426,838	-		Psyr_2081	0.52	-1.2
2,426,915	+		Psyr_2081	0.60	-0.8
2,427,128	+		Psyr_2081	0.82	-0.7
2,427,128	+		Psyr_2081	0.82	-1.3
2,427,128	+		Psyr_2081	0.82	-0.3
2,427,128	+		Psyr_2081	0.82	-0.7
2,427,128	+		Psyr_2081	0.82	-3.1
2,427,129	-		Psyr_2081	0.82	-0.5
2,427,129	-		Psyr_2081	0.82	+0.0
2,427,129	-		Psyr_2081	0.82	+0.6
2,427,129	-		Psyr_2081	0.82	+0.9
2,427,218	+				-0.8
2,427,218	+				+0.0
2,427,219	-				+2.3
2,427,231	-				-0.3