Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2076

Experiment: KB with capsaicin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.125 mg/ml
2,420,559	+				-1.4
2,420,560	-				+0.5
2,420,560	-				+0.7
2,420,568	-				-0.6
2,420,620	+				+1.7
2,420,620	+				-0.4
2,420,620	+				+1.1
2,420,620	+				+0.7
2,420,620	+				+0.2
2,420,620	+				-0.3
2,420,620	+				+0.3
2,420,620	+				-0.1
2,420,620	+				+0.3
2,420,621	-				+0.0
2,420,621	-				+0.2
2,420,621	-				-0.3
2,420,621	-				+0.5
2,420,621	-				+0.2
2,420,621	-				+0.2
2,420,621	-				-0.1
2,420,621	-				-1.1
2,420,621	-				+0.5
2,420,621	-				+0.0
2,420,621	-				+0.6
2,420,621	-				-0.3
2,420,621	-				-2.8
2,420,621	-				+0.1
2,420,653	+		Psyr_2075	0.12	-1.2
2,420,653	+		Psyr_2075	0.12	-0.4
2,420,654	-		Psyr_2075	0.12	+2.3
2,420,876	-		Psyr_2075	0.37	+0.6
2,420,927	+		Psyr_2075	0.42	+0.4
2,420,927	+		Psyr_2075	0.42	-0.6
2,420,927	+		Psyr_2075	0.42	+1.7
2,420,927	+		Psyr_2075	0.42	-0.5
2,420,927	+		Psyr_2075	0.42	+0.9
2,420,927	+		Psyr_2075	0.42	+0.1
2,420,928	-		Psyr_2075	0.42	-1.0
2,420,928	-		Psyr_2075	0.42	-1.0
2,421,435	-				-0.0
2,421,535	+				-0.4
2,421,535	+				+0.2
2,421,535	+				-1.3
2,421,535	+				+1.7
2,421,535	+				+0.3
2,421,535	+				+0.1
2,421,535	+				+1.3
2,421,535	+				+0.5
2,421,536	-				+0.3
2,421,536	-				+1.2
2,421,536	-				+0.1
2,421,536	-				+0.5
2,421,536	-				-0.1
2,421,554	+				+0.6
2,421,555	-				+0.0
2,421,555	-				+1.5
2,421,555	-				-0.1
2,421,576	-				-0.3
2,421,584	+				-0.1
2,421,584	+				+0.3
2,421,584	+				+1.2
2,421,584	+				-0.4
2,421,585	-				-1.8
2,421,585	-				+0.4
2,421,585	-				-0.9
2,421,585	-				-0.1
2,421,589	-		Psyr_2076	0.11	+0.6
2,421,589	-		Psyr_2076	0.11	+0.7
2,421,635	+		Psyr_2076	0.20	-0.3
2,421,635	+		Psyr_2076	0.20	+0.9
2,421,635	+		Psyr_2076	0.20	-0.0
2,421,635	+		Psyr_2076	0.20	-0.8
2,421,636	-		Psyr_2076	0.20	+0.7
2,421,636	-		Psyr_2076	0.20	-0.5
2,421,692	+		Psyr_2076	0.32	+0.7
2,421,693	-		Psyr_2076	0.32	-0.8
2,421,693	-		Psyr_2076	0.32	-0.4
2,421,693	-		Psyr_2076	0.32	+0.6
2,421,756	+		Psyr_2076	0.44	+2.1
2,421,757	-		Psyr_2076	0.45	+1.2
2,421,757	-		Psyr_2076	0.45	+0.1
2,421,757	-		Psyr_2076	0.45	+0.1
2,421,826	+		Psyr_2076	0.59	+0.5
2,421,993	-				-1.3
2,421,993	-				+0.1
2,421,993	-				-1.1
2,422,133	+				+0.8
2,422,135	+				-1.1
2,422,160	+				-0.1
2,422,161	-				-1.8
2,422,176	+				+0.0
2,422,176	+				+1.5
2,422,177	-				-2.6
2,422,177	-				-0.8
2,422,180	+				-0.6
2,422,180	+				-0.3
2,422,180	+				+0.4
2,422,180	+				-0.6
2,422,180	+				-0.6
2,422,180	+				+0.3
2,422,180	+				-0.7
2,422,180	+				+1.0
2,422,180	+				-1.1
2,422,180	+				-1.6
2,422,180	+				-1.1
2,422,180	+				+0.7
2,422,180	+				+0.5
2,422,180	+				-1.0
2,422,180	+				+1.7
2,422,180	+				+0.7
2,422,180	+				+3.1
2,422,180	+				-1.8
2,422,180	+				+1.3
2,422,181	-				-0.6
2,422,181	-				-0.6
2,422,181	-				-3.4
2,422,181	-				-0.8
2,422,181	-				-0.5
2,422,181	-				+1.0
2,422,181	-				+0.2
2,422,181	-				+0.0
2,422,181	-				-0.8
2,422,259	+				-0.4
2,422,259	+				-1.1
2,422,260	-				+0.0
2,422,496	+		Psyr_2077	0.32	+0.1
2,422,670	+		Psyr_2077	0.50	-0.3
2,422,769	+		Psyr_2077	0.60	-0.4
2,422,769	+		Psyr_2077	0.60	-0.5
2,422,770	-		Psyr_2077	0.60	+1.5
2,422,770	-		Psyr_2077	0.60	-0.3
2,422,770	-		Psyr_2077	0.60	+3.9
2,422,770	-		Psyr_2077	0.60	-0.5
2,422,877	+		Psyr_2077	0.71	+1.2
2,422,877	+		Psyr_2077	0.71	+0.6
2,422,877	+		Psyr_2077	0.71	-0.3
2,422,878	-		Psyr_2077	0.71	-1.8
2,422,878	-		Psyr_2077	0.71	-2.3
2,422,878	-		Psyr_2077	0.71	-0.7
2,422,878	-		Psyr_2077	0.71	-1.8