Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1938

Experiment: KB with capsaicin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1936 and Psyr_1937 are separated by 111 nucleotidesPsyr_1937 and Psyr_1938 are separated by 0 nucleotidesPsyr_1938 and Psyr_1939 overlap by 4 nucleotides Psyr_1936: Psyr_1936 - tRNA-U16,U17-dihydrouridine synthase, at 2,209,059 to 2,210,078 _1936 Psyr_1937: Psyr_1937 - UspA, at 2,210,190 to 2,210,621 _1937 Psyr_1938: Psyr_1938 - Response regulator receiver, at 2,210,622 to 2,211,086 _1938 Psyr_1939: Psyr_1939 - PAS, at 2,211,083 to 2,213,422 _1939 Position (kb) 2210 2211 2212Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2209.665 kb on + strand, within Psyr_1936at 2209.897 kb on - strand, within Psyr_1936at 2209.949 kb on + strand, within Psyr_1936at 2209.949 kb on + strand, within Psyr_1936at 2209.950 kb on - strandat 2209.950 kb on - strand, within Psyr_1936at 2209.950 kb on - strand, within Psyr_1936at 2209.950 kb on - strand, within Psyr_1936at 2210.014 kb on + strandat 2210.014 kb on + strandat 2210.014 kb on + strandat 2210.014 kb on + strandat 2210.014 kb on + strandat 2210.015 kb on - strandat 2210.015 kb on - strandat 2210.015 kb on - strandat 2210.015 kb on - strandat 2210.015 kb on - strandat 2210.015 kb on - strandat 2210.015 kb on - strandat 2210.015 kb on - strandat 2210.015 kb on - strandat 2210.015 kb on - strandat 2210.247 kb on + strand, within Psyr_1937at 2210.248 kb on - strand, within Psyr_1937at 2210.248 kb on - strand, within Psyr_1937at 2210.248 kb on - strand, within Psyr_1937at 2210.326 kb on - strand, within Psyr_1937at 2210.619 kb on + strandat 2210.620 kb on - strandat 2210.696 kb on + strand, within Psyr_1938at 2210.697 kb on - strand, within Psyr_1938at 2210.697 kb on - strand, within Psyr_1938at 2210.697 kb on - strand, within Psyr_1938at 2210.698 kb on + strand, within Psyr_1938at 2210.698 kb on + strand, within Psyr_1938at 2210.699 kb on - strand, within Psyr_1938at 2210.699 kb on - strand, within Psyr_1938at 2210.699 kb on - strand, within Psyr_1938at 2210.699 kb on - strand, within Psyr_1938at 2210.848 kb on + strand, within Psyr_1938at 2210.848 kb on + strand, within Psyr_1938at 2210.849 kb on - strand, within Psyr_1938at 2210.863 kb on - strand, within Psyr_1938at 2211.603 kb on - strand, within Psyr_1939at 2211.755 kb on + strand, within Psyr_1939at 2211.755 kb on + strand, within Psyr_1939at 2211.800 kb on + strand, within Psyr_1939at 2211.822 kb on + strand, within Psyr_1939at 2211.822 kb on + strand, within Psyr_1939at 2211.823 kb on - strand, within Psyr_1939

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml
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2,209,665 + Psyr_1936 0.59 +0.3
2,209,897 - Psyr_1936 0.82 +1.7
2,209,949 + Psyr_1936 0.87 +1.0
2,209,949 + Psyr_1936 0.87 +0.4
2,209,950 - +1.4
2,209,950 - Psyr_1936 0.87 -1.2
2,209,950 - Psyr_1936 0.87 -0.6
2,209,950 - Psyr_1936 0.87 -0.7
2,210,014 + -0.7
2,210,014 + +0.4
2,210,014 + +0.3
2,210,014 + +1.9
2,210,014 + -0.4
2,210,015 - -1.2
2,210,015 - +0.1
2,210,015 - -2.0
2,210,015 - +0.1
2,210,015 - -1.0
2,210,015 - -2.8
2,210,015 - -0.2
2,210,015 - -0.1
2,210,015 - -0.2
2,210,015 - -1.8
2,210,247 + Psyr_1937 0.13 +0.9
2,210,248 - Psyr_1937 0.13 +0.6
2,210,248 - Psyr_1937 0.13 +1.4
2,210,248 - Psyr_1937 0.13 +0.6
2,210,326 - Psyr_1937 0.31 +1.8
2,210,619 + -0.3
2,210,620 - +0.5
2,210,696 + Psyr_1938 0.16 +3.4
2,210,697 - Psyr_1938 0.16 -0.8
2,210,697 - Psyr_1938 0.16 -0.7
2,210,697 - Psyr_1938 0.16 +1.3
2,210,698 + Psyr_1938 0.16 +0.5
2,210,698 + Psyr_1938 0.16 -0.1
2,210,699 - Psyr_1938 0.17 +0.6
2,210,699 - Psyr_1938 0.17 -0.1
2,210,699 - Psyr_1938 0.17 +0.9
2,210,699 - Psyr_1938 0.17 +2.1
2,210,848 + Psyr_1938 0.49 +0.5
2,210,848 + Psyr_1938 0.49 -2.1
2,210,849 - Psyr_1938 0.49 +1.8
2,210,863 - Psyr_1938 0.52 +0.2
2,211,603 - Psyr_1939 0.22 +0.8
2,211,755 + Psyr_1939 0.29 +0.0
2,211,755 + Psyr_1939 0.29 -0.8
2,211,800 + Psyr_1939 0.31 +0.8
2,211,822 + Psyr_1939 0.32 +1.4
2,211,822 + Psyr_1939 0.32 -0.9
2,211,823 - Psyr_1939 0.32 +1.2

Or see this region's nucleotide sequence