Experiment: KB with capsaicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1293 and Psyr_1294 overlap by 28 nucleotides Psyr_1294 and Psyr_1295 are separated by 289 nucleotides Psyr_1295 and Psyr_1296 are separated by 171 nucleotides
Psyr_1293: Psyr_1293 - EAL:Response regulator receiver, at 1,461,470 to 1,462,831
_1293
Psyr_1294: Psyr_1294 - regulatory protein, LuxR:Response regulator receiver, at 1,462,804 to 1,463,466
_1294
Psyr_1295: Psyr_1295 - conserved domain protein, at 1,463,756 to 1,464,052
_1295
Psyr_1296: Psyr_1296 - conserved hypothetical protein, at 1,464,224 to 1,465,102
_1296
Position (kb) 1462
1463
1464 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1461.872 kb on + strand, within Psyr_1293 at 1461.872 kb on + strand, within Psyr_1293 at 1461.872 kb on + strand, within Psyr_1293 at 1461.906 kb on - strand, within Psyr_1293 at 1461.906 kb on - strand, within Psyr_1293 at 1461.906 kb on - strand, within Psyr_1293 at 1461.946 kb on + strand, within Psyr_1293 at 1461.946 kb on + strand, within Psyr_1293 at 1461.946 kb on + strand, within Psyr_1293 at 1461.946 kb on + strand, within Psyr_1293 at 1461.946 kb on + strand, within Psyr_1293 at 1461.946 kb on + strand, within Psyr_1293 at 1461.946 kb on + strand, within Psyr_1293 at 1461.947 kb on - strand, within Psyr_1293 at 1461.947 kb on - strand, within Psyr_1293 at 1461.947 kb on - strand, within Psyr_1293 at 1461.947 kb on - strand, within Psyr_1293 at 1461.947 kb on - strand, within Psyr_1293 at 1461.947 kb on - strand, within Psyr_1293 at 1461.947 kb on - strand, within Psyr_1293 at 1461.947 kb on - strand, within Psyr_1293 at 1461.947 kb on - strand, within Psyr_1293 at 1461.948 kb on + strand, within Psyr_1293 at 1461.948 kb on + strand, within Psyr_1293 at 1461.948 kb on + strand, within Psyr_1293 at 1461.948 kb on + strand, within Psyr_1293 at 1461.949 kb on - strand, within Psyr_1293 at 1461.949 kb on - strand, within Psyr_1293 at 1461.949 kb on - strand, within Psyr_1293 at 1462.026 kb on + strand, within Psyr_1293 at 1462.061 kb on + strand, within Psyr_1293 at 1462.061 kb on + strand, within Psyr_1293 at 1462.061 kb on + strand, within Psyr_1293 at 1462.061 kb on + strand, within Psyr_1293 at 1462.061 kb on + strand, within Psyr_1293 at 1462.137 kb on - strand, within Psyr_1293 at 1462.137 kb on - strand, within Psyr_1293 at 1462.515 kb on + strand, within Psyr_1293 at 1462.515 kb on + strand, within Psyr_1293 at 1462.765 kb on + strand at 1462.766 kb on - strand at 1462.829 kb on + strand at 1462.829 kb on + strand at 1462.829 kb on + strand at 1462.829 kb on + strand at 1462.830 kb on - strand at 1462.830 kb on - strand at 1462.830 kb on - strand at 1462.963 kb on + strand, within Psyr_1294 at 1462.964 kb on - strand, within Psyr_1294 at 1463.083 kb on + strand, within Psyr_1294 at 1463.321 kb on - strand, within Psyr_1294 at 1463.386 kb on + strand, within Psyr_1294 at 1463.387 kb on - strand, within Psyr_1294 at 1463.489 kb on + strand at 1463.490 kb on - strand at 1463.498 kb on - strand at 1463.539 kb on + strand at 1463.539 kb on + strand at 1463.540 kb on - strand at 1463.550 kb on + strand at 1463.550 kb on + strand at 1463.551 kb on - strand at 1463.551 kb on - strand at 1463.568 kb on + strand at 1463.568 kb on + strand at 1463.568 kb on + strand at 1463.568 kb on + strand at 1463.569 kb on - strand at 1463.569 kb on - strand at 1463.569 kb on - strand at 1463.569 kb on - strand at 1463.682 kb on - strand at 1463.764 kb on + strand at 1463.765 kb on - strand at 1463.772 kb on + strand at 1463.778 kb on + strand at 1463.857 kb on + strand, within Psyr_1295 at 1464.097 kb on + strand at 1464.097 kb on + strand at 1464.097 kb on + strand at 1464.097 kb on + strand at 1464.098 kb on - strand at 1464.098 kb on - strand at 1464.098 kb on - strand at 1464.098 kb on - strand at 1464.098 kb on - strand at 1464.098 kb on - strand at 1464.098 kb on - strand at 1464.098 kb on - strand at 1464.098 kb on - strand at 1464.115 kb on - strand at 1464.115 kb on - strand at 1464.158 kb on + strand at 1464.159 kb on - strand at 1464.261 kb on + strand at 1464.261 kb on + strand at 1464.262 kb on - strand at 1464.297 kb on + strand at 1464.297 kb on + strand at 1464.298 kb on - strand at 1464.298 kb on - strand at 1464.393 kb on + strand, within Psyr_1296 at 1464.394 kb on - strand, within Psyr_1296 at 1464.394 kb on - strand, within Psyr_1296 at 1464.406 kb on - strand, within Psyr_1296
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml remove 1,461,872 + Psyr_1293 0.30 -1.8 1,461,872 + Psyr_1293 0.30 -0.4 1,461,872 + Psyr_1293 0.30 +0.2 1,461,906 - Psyr_1293 0.32 +0.4 1,461,906 - Psyr_1293 0.32 +0.1 1,461,906 - Psyr_1293 0.32 -3.5 1,461,946 + Psyr_1293 0.35 +0.1 1,461,946 + Psyr_1293 0.35 +0.2 1,461,946 + Psyr_1293 0.35 +0.6 1,461,946 + Psyr_1293 0.35 +1.2 1,461,946 + Psyr_1293 0.35 +1.0 1,461,946 + Psyr_1293 0.35 +0.7 1,461,946 + Psyr_1293 0.35 +0.5 1,461,947 - Psyr_1293 0.35 +0.6 1,461,947 - Psyr_1293 0.35 -0.3 1,461,947 - Psyr_1293 0.35 +0.9 1,461,947 - Psyr_1293 0.35 +1.2 1,461,947 - Psyr_1293 0.35 -0.6 1,461,947 - Psyr_1293 0.35 +0.3 1,461,947 - Psyr_1293 0.35 -0.2 1,461,947 - Psyr_1293 0.35 +0.5 1,461,947 - Psyr_1293 0.35 +0.8 1,461,948 + Psyr_1293 0.35 -0.7 1,461,948 + Psyr_1293 0.35 +1.0 1,461,948 + Psyr_1293 0.35 +0.5 1,461,948 + Psyr_1293 0.35 -0.4 1,461,949 - Psyr_1293 0.35 +0.3 1,461,949 - Psyr_1293 0.35 +0.7 1,461,949 - Psyr_1293 0.35 +0.7 1,462,026 + Psyr_1293 0.41 +0.2 1,462,061 + Psyr_1293 0.43 +1.0 1,462,061 + Psyr_1293 0.43 +0.6 1,462,061 + Psyr_1293 0.43 +2.0 1,462,061 + Psyr_1293 0.43 +1.4 1,462,061 + Psyr_1293 0.43 +1.0 1,462,137 - Psyr_1293 0.49 -0.1 1,462,137 - Psyr_1293 0.49 +0.3 1,462,515 + Psyr_1293 0.77 +1.5 1,462,515 + Psyr_1293 0.77 -1.7 1,462,765 + +1.1 1,462,766 - +0.6 1,462,829 + -1.2 1,462,829 + -0.9 1,462,829 + -2.2 1,462,829 + -0.9 1,462,830 - +0.8 1,462,830 - -0.9 1,462,830 - -0.2 1,462,963 + Psyr_1294 0.24 +0.0 1,462,964 - Psyr_1294 0.24 -0.5 1,463,083 + Psyr_1294 0.42 -1.4 1,463,321 - Psyr_1294 0.78 -1.9 1,463,386 + Psyr_1294 0.88 -0.7 1,463,387 - Psyr_1294 0.88 -0.2 1,463,489 + -0.5 1,463,490 - -0.1 1,463,498 - +0.2 1,463,539 + -1.7 1,463,539 + +1.0 1,463,540 - +4.0 1,463,550 + +0.2 1,463,550 + +1.0 1,463,551 - +0.0 1,463,551 - +0.1 1,463,568 + -0.4 1,463,568 + -0.7 1,463,568 + +0.9 1,463,568 + +1.1 1,463,569 - +0.5 1,463,569 - +0.0 1,463,569 - +0.0 1,463,569 - -2.5 1,463,682 - -1.3 1,463,764 + -0.1 1,463,765 - -0.6 1,463,772 + -0.9 1,463,778 + -0.3 1,463,857 + Psyr_1295 0.34 -0.3 1,464,097 + -0.0 1,464,097 + +0.5 1,464,097 + +0.6 1,464,097 + +0.7 1,464,098 - -0.6 1,464,098 - -1.8 1,464,098 - -0.3 1,464,098 - -0.6 1,464,098 - -0.6 1,464,098 - -0.4 1,464,098 - +2.0 1,464,098 - -0.3 1,464,098 - +0.1 1,464,115 - -1.0 1,464,115 - +0.4 1,464,158 + -1.3 1,464,159 - +1.2 1,464,261 + +0.3 1,464,261 + +3.6 1,464,262 - +1.0 1,464,297 + +0.2 1,464,297 + +0.3 1,464,298 - +0.0 1,464,298 - -0.8 1,464,393 + Psyr_1296 0.19 +0.1 1,464,394 - Psyr_1296 0.19 -0.5 1,464,394 - Psyr_1296 0.19 -1.0 1,464,406 - Psyr_1296 0.21 +0.0
Or see this region's nucleotide sequence