Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1212

Experiment: KB with capsaicin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1210 and Psyr_1211 overlap by 4 nucleotidesPsyr_1211 and Psyr_1212 are separated by 6 nucleotidesPsyr_1212 and Psyr_1213 are separated by 2 nucleotides Psyr_1210: Psyr_1210 - type III secretion protein HrcQa, at 1,367,316 to 1,368,032 _1210 Psyr_1211: Psyr_1211 - type III secretion protein HrpP, at 1,368,029 to 1,368,601 _1211 Psyr_1212: Psyr_1212 - type III secretion protein HrpO, at 1,368,608 to 1,369,054 _1212 Psyr_1213: Psyr_1213 - type III secretion cytoplasmic ATPase HrcN, at 1,369,057 to 1,370,406 _1213 Position (kb) 1368 1369 1370Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1367.656 kb on - strand, within Psyr_1210at 1367.656 kb on - strand, within Psyr_1210at 1367.656 kb on - strand, within Psyr_1210at 1367.757 kb on + strand, within Psyr_1210at 1367.757 kb on + strand, within Psyr_1210at 1367.802 kb on + strand, within Psyr_1210at 1367.802 kb on + strand, within Psyr_1210at 1367.803 kb on - strand, within Psyr_1210at 1367.803 kb on - strand, within Psyr_1210at 1367.864 kb on + strand, within Psyr_1210at 1367.864 kb on + strand, within Psyr_1210at 1367.865 kb on - strand, within Psyr_1210at 1368.362 kb on + strand, within Psyr_1211at 1368.362 kb on + strand, within Psyr_1211at 1368.363 kb on - strand, within Psyr_1211at 1368.363 kb on - strand, within Psyr_1211at 1368.455 kb on + strand, within Psyr_1211at 1368.455 kb on + strand, within Psyr_1211at 1368.455 kb on + strand, within Psyr_1211at 1368.455 kb on + strand, within Psyr_1211at 1368.455 kb on + strand, within Psyr_1211at 1368.455 kb on + strand, within Psyr_1211at 1368.455 kb on + strand, within Psyr_1211at 1368.455 kb on + strand, within Psyr_1211at 1368.455 kb on + strand, within Psyr_1211at 1368.456 kb on - strand, within Psyr_1211at 1368.456 kb on - strand, within Psyr_1211at 1368.456 kb on - strand, within Psyr_1211at 1368.456 kb on - strand, within Psyr_1211at 1368.456 kb on - strand, within Psyr_1211at 1368.609 kb on + strandat 1368.610 kb on - strandat 1368.716 kb on + strand, within Psyr_1212at 1368.862 kb on + strand, within Psyr_1212at 1368.863 kb on - strand, within Psyr_1212at 1368.905 kb on + strand, within Psyr_1212at 1368.906 kb on - strand, within Psyr_1212at 1369.151 kb on - strandat 1369.151 kb on - strandat 1369.152 kb on + strandat 1369.206 kb on - strand, within Psyr_1213at 1369.239 kb on + strand, within Psyr_1213at 1369.239 kb on + strand, within Psyr_1213at 1369.240 kb on - strand, within Psyr_1213at 1369.241 kb on + strand, within Psyr_1213at 1369.241 kb on + strand, within Psyr_1213at 1369.241 kb on + strand, within Psyr_1213at 1369.242 kb on - strand, within Psyr_1213at 1369.242 kb on - strand, within Psyr_1213at 1369.378 kb on + strand, within Psyr_1213at 1369.378 kb on + strand, within Psyr_1213at 1369.378 kb on + strand, within Psyr_1213at 1369.379 kb on - strand, within Psyr_1213at 1369.379 kb on - strand, within Psyr_1213at 1369.450 kb on + strand, within Psyr_1213at 1369.457 kb on + strand, within Psyr_1213at 1369.457 kb on + strand, within Psyr_1213at 1369.457 kb on + strand, within Psyr_1213at 1369.523 kb on + strand, within Psyr_1213at 1369.524 kb on - strand, within Psyr_1213at 1369.524 kb on - strand, within Psyr_1213at 1369.524 kb on - strand, within Psyr_1213

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml
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1,367,656 - Psyr_1210 0.47 -0.5
1,367,656 - Psyr_1210 0.47 -0.1
1,367,656 - Psyr_1210 0.47 +2.0
1,367,757 + Psyr_1210 0.62 +0.3
1,367,757 + Psyr_1210 0.62 +0.2
1,367,802 + Psyr_1210 0.68 -0.7
1,367,802 + Psyr_1210 0.68 +1.0
1,367,803 - Psyr_1210 0.68 -0.9
1,367,803 - Psyr_1210 0.68 +1.0
1,367,864 + Psyr_1210 0.76 -0.2
1,367,864 + Psyr_1210 0.76 +0.2
1,367,865 - Psyr_1210 0.77 -0.4
1,368,362 + Psyr_1211 0.58 -3.2
1,368,362 + Psyr_1211 0.58 +0.1
1,368,363 - Psyr_1211 0.58 +0.2
1,368,363 - Psyr_1211 0.58 +1.6
1,368,455 + Psyr_1211 0.74 -0.2
1,368,455 + Psyr_1211 0.74 -0.2
1,368,455 + Psyr_1211 0.74 +0.4
1,368,455 + Psyr_1211 0.74 -0.8
1,368,455 + Psyr_1211 0.74 -0.5
1,368,455 + Psyr_1211 0.74 +0.7
1,368,455 + Psyr_1211 0.74 -1.7
1,368,455 + Psyr_1211 0.74 +1.0
1,368,455 + Psyr_1211 0.74 -0.9
1,368,456 - Psyr_1211 0.75 -0.2
1,368,456 - Psyr_1211 0.75 +1.0
1,368,456 - Psyr_1211 0.75 -0.6
1,368,456 - Psyr_1211 0.75 +0.0
1,368,456 - Psyr_1211 0.75 +0.7
1,368,609 + +0.0
1,368,610 - +0.8
1,368,716 + Psyr_1212 0.24 -2.2
1,368,862 + Psyr_1212 0.57 -0.2
1,368,863 - Psyr_1212 0.57 -1.6
1,368,905 + Psyr_1212 0.66 -1.3
1,368,906 - Psyr_1212 0.67 +0.7
1,369,151 - +1.3
1,369,151 - +0.9
1,369,152 + -0.9
1,369,206 - Psyr_1213 0.11 +0.4
1,369,239 + Psyr_1213 0.13 +0.3
1,369,239 + Psyr_1213 0.13 +1.6
1,369,240 - Psyr_1213 0.14 -0.7
1,369,241 + Psyr_1213 0.14 -0.9
1,369,241 + Psyr_1213 0.14 +0.1
1,369,241 + Psyr_1213 0.14 +0.4
1,369,242 - Psyr_1213 0.14 +0.3
1,369,242 - Psyr_1213 0.14 -1.1
1,369,378 + Psyr_1213 0.24 +0.5
1,369,378 + Psyr_1213 0.24 +0.9
1,369,378 + Psyr_1213 0.24 +1.4
1,369,379 - Psyr_1213 0.24 -0.1
1,369,379 - Psyr_1213 0.24 +0.3
1,369,450 + Psyr_1213 0.29 -0.1
1,369,457 + Psyr_1213 0.30 +0.3
1,369,457 + Psyr_1213 0.30 -0.9
1,369,457 + Psyr_1213 0.30 +0.3
1,369,523 + Psyr_1213 0.35 -0.9
1,369,524 - Psyr_1213 0.35 -0.8
1,369,524 - Psyr_1213 0.35 -0.5
1,369,524 - Psyr_1213 0.35 -1.4

Or see this region's nucleotide sequence