Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1164

Experiment: KB with capsaicin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1162 and Psyr_1163 overlap by 1 nucleotidesPsyr_1163 and Psyr_1164 overlap by 4 nucleotidesPsyr_1164 and Psyr_1165 are separated by 2 nucleotidesPsyr_1165 and Psyr_1166 are separated by 4 nucleotides Psyr_1162: Psyr_1162 - conserved hypothetical protein, at 1,316,345 to 1,316,740 _1162 Psyr_1163: Psyr_1163 - Isochorismatase hydrolase, at 1,316,740 to 1,317,417 _1163 Psyr_1164: Psyr_1164 - nucleoside ABC transporter ATP-binding protein, at 1,317,414 to 1,318,949 _1164 Psyr_1165: Psyr_1165 - Isochorismatase hydrolase, at 1,318,952 to 1,319,638 _1165 Psyr_1166: Psyr_1166 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase, at 1,319,643 to 1,320,659 _1166 Position (kb) 1317 1318 1319Strain fitness (log2 ratio) -2 -1 0 1at 1316.640 kb on + strand, within Psyr_1162at 1316.640 kb on + strand, within Psyr_1162at 1316.640 kb on + strand, within Psyr_1162at 1316.641 kb on - strand, within Psyr_1162at 1316.641 kb on - strand, within Psyr_1162at 1316.641 kb on - strand, within Psyr_1162at 1316.641 kb on - strand, within Psyr_1162at 1316.686 kb on - strand, within Psyr_1162at 1316.858 kb on + strand, within Psyr_1163at 1316.858 kb on + strand, within Psyr_1163at 1316.859 kb on - strand, within Psyr_1163at 1316.859 kb on - strand, within Psyr_1163at 1316.859 kb on - strand, within Psyr_1163at 1316.859 kb on - strand, within Psyr_1163at 1317.269 kb on - strand, within Psyr_1163at 1317.708 kb on + strand, within Psyr_1164at 1317.709 kb on - strand, within Psyr_1164at 1317.709 kb on - strand, within Psyr_1164at 1317.933 kb on + strand, within Psyr_1164at 1317.980 kb on - strand, within Psyr_1164at 1318.000 kb on - strand, within Psyr_1164at 1318.133 kb on + strand, within Psyr_1164at 1318.133 kb on + strand, within Psyr_1164at 1318.134 kb on - strand, within Psyr_1164at 1318.134 kb on - strand, within Psyr_1164at 1318.222 kb on - strand, within Psyr_1164at 1318.330 kb on + strand, within Psyr_1164at 1318.330 kb on + strand, within Psyr_1164at 1318.484 kb on - strand, within Psyr_1164at 1318.546 kb on + strand, within Psyr_1164at 1318.547 kb on - strand, within Psyr_1164at 1318.547 kb on - strand, within Psyr_1164at 1318.547 kb on - strand, within Psyr_1164at 1318.547 kb on - strand, within Psyr_1164at 1318.693 kb on + strand, within Psyr_1164at 1318.694 kb on - strand, within Psyr_1164at 1318.694 kb on - strand, within Psyr_1164at 1318.814 kb on + strandat 1318.815 kb on - strandat 1318.815 kb on - strandat 1318.815 kb on - strandat 1318.815 kb on - strandat 1318.815 kb on - strandat 1318.909 kb on + strandat 1318.909 kb on + strandat 1318.909 kb on + strandat 1318.909 kb on + strandat 1318.909 kb on + strandat 1318.909 kb on + strandat 1318.909 kb on + strandat 1318.910 kb on - strandat 1319.608 kb on - strandat 1319.623 kb on + strandat 1319.623 kb on + strandat 1319.623 kb on + strandat 1319.624 kb on - strandat 1319.624 kb on - strandat 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.782 kb on + strand, within Psyr_1166at 1319.782 kb on + strand, within Psyr_1166at 1319.782 kb on + strand, within Psyr_1166at 1319.783 kb on - strand, within Psyr_1166at 1319.783 kb on - strand, within Psyr_1166at 1319.783 kb on - strand, within Psyr_1166at 1319.839 kb on + strandat 1319.839 kb on + strand, within Psyr_1166at 1319.840 kb on - strand, within Psyr_1166at 1319.840 kb on - strand, within Psyr_1166at 1319.840 kb on - strand, within Psyr_1166at 1319.840 kb on - strand, within Psyr_1166

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml
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1,316,640 + Psyr_1162 0.74 -1.0
1,316,640 + Psyr_1162 0.74 +0.8
1,316,640 + Psyr_1162 0.74 -0.1
1,316,641 - Psyr_1162 0.75 +0.0
1,316,641 - Psyr_1162 0.75 -0.9
1,316,641 - Psyr_1162 0.75 -1.0
1,316,641 - Psyr_1162 0.75 +1.7
1,316,686 - Psyr_1162 0.86 +0.5
1,316,858 + Psyr_1163 0.17 +0.3
1,316,858 + Psyr_1163 0.17 -0.5
1,316,859 - Psyr_1163 0.18 -0.9
1,316,859 - Psyr_1163 0.18 -0.6
1,316,859 - Psyr_1163 0.18 -0.2
1,316,859 - Psyr_1163 0.18 +1.0
1,317,269 - Psyr_1163 0.78 -0.6
1,317,708 + Psyr_1164 0.19 -0.9
1,317,709 - Psyr_1164 0.19 -1.8
1,317,709 - Psyr_1164 0.19 -0.3
1,317,933 + Psyr_1164 0.34 +0.5
1,317,980 - Psyr_1164 0.37 -1.2
1,318,000 - Psyr_1164 0.38 -0.7
1,318,133 + Psyr_1164 0.47 -0.4
1,318,133 + Psyr_1164 0.47 +1.2
1,318,134 - Psyr_1164 0.47 -1.5
1,318,134 - Psyr_1164 0.47 +0.9
1,318,222 - Psyr_1164 0.53 -0.4
1,318,330 + Psyr_1164 0.60 -1.4
1,318,330 + Psyr_1164 0.60 +1.1
1,318,484 - Psyr_1164 0.70 -1.2
1,318,546 + Psyr_1164 0.74 -2.4
1,318,547 - Psyr_1164 0.74 -0.4
1,318,547 - Psyr_1164 0.74 -1.0
1,318,547 - Psyr_1164 0.74 -0.3
1,318,547 - Psyr_1164 0.74 -1.3
1,318,693 + Psyr_1164 0.83 +0.9
1,318,694 - Psyr_1164 0.83 -0.3
1,318,694 - Psyr_1164 0.83 -0.2
1,318,814 + +1.0
1,318,815 - -1.5
1,318,815 - -0.4
1,318,815 - -1.7
1,318,815 - +1.7
1,318,815 - +1.2
1,318,909 + -0.8
1,318,909 + +0.0
1,318,909 + -1.0
1,318,909 + -2.2
1,318,909 + -1.0
1,318,909 + -0.2
1,318,909 + +0.4
1,318,910 - -1.4
1,319,608 - -0.4
1,319,623 + +0.6
1,319,623 + +0.9
1,319,623 + +1.6
1,319,624 - +0.4
1,319,624 - -0.8
1,319,776 + Psyr_1166 0.13 -0.2
1,319,776 + Psyr_1166 0.13 -2.0
1,319,776 + Psyr_1166 0.13 -0.2
1,319,776 + Psyr_1166 0.13 +0.0
1,319,776 + Psyr_1166 0.13 -1.2
1,319,776 + Psyr_1166 0.13 -0.3
1,319,776 + Psyr_1166 0.13 -1.0
1,319,776 + Psyr_1166 0.13 +0.6
1,319,776 + Psyr_1166 0.13 +1.0
1,319,776 + Psyr_1166 0.13 -1.1
1,319,776 + Psyr_1166 0.13 +0.4
1,319,777 - Psyr_1166 0.13 -2.1
1,319,777 - Psyr_1166 0.13 +0.3
1,319,777 - Psyr_1166 0.13 +0.8
1,319,777 - Psyr_1166 0.13 -0.7
1,319,777 - Psyr_1166 0.13 -1.3
1,319,777 - Psyr_1166 0.13 -0.3
1,319,777 - Psyr_1166 0.13 +0.3
1,319,777 - Psyr_1166 0.13 +1.0
1,319,777 - Psyr_1166 0.13 -0.1
1,319,782 + Psyr_1166 0.14 -0.3
1,319,782 + Psyr_1166 0.14 +0.0
1,319,782 + Psyr_1166 0.14 -1.5
1,319,783 - Psyr_1166 0.14 -0.2
1,319,783 - Psyr_1166 0.14 -1.0
1,319,783 - Psyr_1166 0.14 -0.1
1,319,839 + -1.1
1,319,839 + Psyr_1166 0.19 -1.6
1,319,840 - Psyr_1166 0.19 -1.6
1,319,840 - Psyr_1166 0.19 +0.5
1,319,840 - Psyr_1166 0.19 -1.5
1,319,840 - Psyr_1166 0.19 +0.7

Or see this region's nucleotide sequence